CI01000029_04144327_04203475 (MARK3B, MARK3)


Basic Information

Item Value
gene id CI01000029_04144327_04203475
gene name MARK3B, MARK3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4144327 ~ 4203475 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04144327_04203475.mRNA
CACACATCACACACAGATGGGCGAAATGAAGTGGCGTCCCGACCCGGGCGGTCAGGGGCCCGCTGTCGGAACTCCATTGCCTCCTGTGCTGATGAACAGCCACATATTGGCAACTATAGGCTCCTCAAAACCATCGGCAAGGGCAACTTTGCCAAGGTCAAATTGGCACGACACATTCTTACAGGACGAGAGGTGGCCATAAAAATAATTGATAAGACACAACTTAATCCTACCAGCCTTCAAAAGCTCTTCAGGGAAGTAAGAATAATGAAGATTCTAAATCATCCAAATATTGTAAAACTCTTTGAGGTCATAGAAACAGACAAGACACTTTATCTGGTGATGGAGTACGCCAGCGGTGGGGAGGTGTTTGACTACCTCGTAGCACATGGACGCATGAAGGAGAAGGAGGCCAGAGCTAAATTTAGACAGATTGTTTCAGCGGTTCAGTATTGCCATCAAAAACACATTGTCCACAGAGATCTCAAGGCAGAAAACCTACTGCTGGATGCAGATATGAACATTAAGATTGCAGACTTCGGTTTCAGTAATGAATTTACTATTGGGAACAAACTAGACACGTTTTGTGGCAGCCCGCCGTATGCGGCTCCTGAACTTTTCCAGGGCAAAAAGTATGACGGGCCGGAGGTGGATGTGTGGAGTCTGGGGGTCATACTCTACACACTGGTCAGTGGATCACTGCCCTTTGATGGACAGAATCTAAAGGAACTTCGTGAGCGGGTGTTGAGGGGCAAATATCGAATTCCCTTCTACATGTCGACCGACTGTGAGAACCTCCTGAAACGCTTCCTGGTGCTGAACCCTGTGAAACGGGGCACACTCGAGCAAATCATGAAGGATCGATGGATCAACGCAGGCTGTGAGGAGGACGAGCTCAAACCGTTTGTGGAGCCGGAGCTCGACATCTCGGATCAGAAGAGAATTGATATTATGGTGGGAATGGGCTACTCACGGGAGGAGATCCACGAATCTCTAACCAGGATGAAGTACGATGAAATCACGGCTACCTACCTGCTATTAGGCAGGAAGTCCACTGAGTTGGAGGTGAGTGATTCCAGCTCCAGCAGTAACCTCTCTCTAGCCAAGGCCAGACCCAACAGCGAGCACAACAACGGCCAGTCACCATCTCACCTCAAAGTCCAAAAGAACGTCTCCTCCAACCAGAAACAGCGTCGTTACAGTGACCAGGCTGGTCCAACCATTCCCTCGGTGGGTTACCCCAAGAGAAGTCAGACCACTTCTGCAGAAAGTGACCATAAAGAGGAGGGCAGTGCACAGGCACGTAAGTCCAGCTCATCTGGAAGCCGTGGCATGGCTCCACCCAGCCCCATGCTGGGCAACGCCAACAACCCAAACAAGGCCGACATTCCTGACCGCAAAAAGAGCGCTGGTGCCCCTGGGAGCAATTCTGTGTCTAGCAGTATGACCAGGAGAAACACGTACGTGTGTAGTGAGAGGACTGCCACAGACCGCCACGCCGTCATCCAGAACGGCAAAGAGAACAGTACGAGCGCGGCTCAGACGACTCAGCGGAACCCTGGTTCCTCCACCCACAGTATTAGTAGCGCGACTCCCCCGGACCGCCTGCGTTTCCCACGAGGCACGCTGAGCCGCAGCACTTTCCACGGAGGCCAGCTGAGGGAGCGACGCACAGCTACCTATAATGGACCCCCTGCCTCTCCAACCTTATCGCATGACGCCACGCCACTCTCACAGTCCCGGAGCCGTGGATCAACAAACCTCTTCACGAAGCTCACATCCAAGCTCACACGCAGAAATATGTCATTCAGGTTTACCAAAAGAGTGCCGGCAGAATGCGATAGAAATGGGAGGTATGAGGACTCAAGTCGAAATGTGTCTGGGGAGCAGAAAGAAGAACATAAAGACGCCAAACCCCGCTCGCTACGCTTCACCTGGAGCATGAAGACCACCTCCTCCATGGAGCCCACAGAGATGATGCGTGAGATCCGCAAAGTCCTGGACGCCAACAACTGCGATTACGAGCAGCGTGAGCGCTTCCTGCTTCTATGCGTCCACGGCGACGGCCACGCCGAGAGCTTGGTCCAATGGGAGATGGAGGTGTGCAAACTGCCCCGCCTCTCGCTAAACGGCGTCCGCTTCAAGCGGATATCAGGAACATCCATCGCTTTCAAAAACATCGCCTCAAAAATTGCCAACGAACTAAAGCTG

Function

symbol description
mark3b Predicted to enable protein serine/threonine kinase activity and tau-protein kinase activity. Predicted to be involved in intracellular signal transduction and microtubule cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in dendrite. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in visual impairment and progressive phthisis bulbi. Orthologous to human MARK3 (microtubule affinity regulating kinase 3).
mark3 Enables protein serine/threonine kinase activity and tau-protein kinase activity. Involved in negative regulation of hippo signaling; peptidyl-serine autophosphorylation; and positive regulation of protein binding activity. Located in cytoplasm; dendrite; and plasma membrane. Implicated in visual impairment and progressive phthisis bulbi.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04144327_04203475.mRNA True 2211 mRNA 0.52 17 4144327 4203475

Neighbor

gene id symbol gene type direction distance location
CI01000029_04138798_04141675 LAPTM4A, LAP4A coding downstream 2652 4138798 ~ 4141675 (-)
CI01000029_04125071_04135324 MATN3, MATN3A coding downstream 8953 4124741 ~ 4135374 (-)
CI01000029_04122433_04123725 TTC32 coding downstream 20602 4122208 ~ 4123725 (-)
CI01000029_04115189_04121331 NA coding downstream 22996 4115163 ~ 4121331 (-)
CI01000029_04108560_04110587 MIXL1 coding downstream 33456 4108398 ~ 4110871 (-)
CI01000029_04246988_04247383 RUNX2B coding upstream 41632 4245107 ~ 4249051 (-)
CI01000029_04272476_04278373 RUNX2A, RUNX2 coding upstream 68111 4271586 ~ 4278981 (-)
CI01000029_04433110_04458444 MUT coding upstream 229579 4433054 ~ 4458444 (-)
CI01000029_04460778_04463540 FKBP1B coding upstream 256684 4460159 ~ 4463540 (-)
CI01000029_04485919_04510826 MFSD2B coding upstream 282444 4485919 ~ 4510826 (-)
G154154 NA non-coding downstream 43199 4098970 ~ 4101128 (-)
G154152 NA non-coding downstream 68212 4075888 ~ 4076115 (-)
CI01000029_04071708_04075046 NA non-coding downstream 72409 4070724 ~ 4075299 (-)
G154148 NA non-coding downstream 73886 4069253 ~ 4070441 (-)
G154147 NA non-coding downstream 75505 4068588 ~ 4068822 (-)
G154169 NA non-coding upstream 32301 4235776 ~ 4236640 (-)
G154170 NA non-coding upstream 33287 4236762 ~ 4237074 (-)
G154171 NA non-coding upstream 35732 4239207 ~ 4239437 (-)
G154172 NA non-coding upstream 38230 4241705 ~ 4241998 (-)
G154198 NA non-coding upstream 191944 4395419 ~ 4395750 (-)
CI01000029_03698769_03707177 NA other downstream 437075 3698572 ~ 3707883 (-)
G153891 NA other downstream 857773 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1551525 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2850204 1292249 ~ 1294123 (-)
G154415 NA other upstream 782633 4986108 ~ 4990990 (-)
G156542 NA other upstream 2966892 7170367 ~ 7170951 (-)
G156495 NA other upstream 3162852 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000547 NA coding CM030141.1 CM030141.1 18125808 ~ 18153361 (+)