CI01000029_04071708_04075046


Basic Information

Item Value
gene id CI01000029_04071708_04075046
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4070724 ~ 4075299 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04071708_04075046.mRNA
ATCTACACTGTTCATTGACTCACTGCTTTACTTTGACTTAAACACTTTCAGAGATATAACACTGGATAACACATATCAGATCTAGTAACATACAAGTATGAGTTCTTGATTTCTTTTTACCTACTGACGGTTTATTCGGAAGGTCAATTCCTCATTCAAAGGCATAGTAAAGTCAATCAGACAAATCATTTTACTACAAAGCTTAATATCTGACTTTCATTCATTGTTTTTCTTTTTATGTCTACAGGTCAAAATGAACGAGTCTATCACCAACTTCACTTTCTTGCTGACTCTGCTCTACGTCAACACAACTTATATGAAAGTCACCTCTTATGAAAATAACACATTTGTGCAGTTCACCTATGGTCTGTCCACCATGTCCACACTTACGCAAGGTAAACTTACACAAACTACCTCTTCTACTACTACTACAAATACAACAACAGCTGCACCCAACATCCTAGCATCCATAAACCTGCCTTACATGATAGCCGAGCTTGTCATTGCCTTGCTCTCCACAGTGGGAAACCTGCTGGTTTGTGTTGCGGTGGGACTAAACAGAAAGCTCCAAACAGTTACTAATTACTTTCTGGTTTCGCTGGCAGTGGCGGATATATGCGTGTGTTCCCTGGCGATCCCCTGCGCCATTATGACGGACCTGGGAATTTCACGGCACAATCTGCATCTGTGTTTGTTAATCTTATCTGTGCTCATCATGTTAACCCAGAATTCCATCTTCAGCTTGCTGGCAGTCGCTGTGGAGCGTTACGTAGCCATTTTCATGCCCTTCCAGTACCACCGGCTCATGACACCTTGCAACGCAGTGCTGGTCTTGTGCGTCACTTGGACACTGGCCTTCCTGATCGGTCTGGTGCCGTTGATGGGATGGCACAAGCCTCCACCTGAGACGGGCTACTGTATCTTCCTGTTGGTGGTGGATATGACCTACATGGTCTACTTCAACTTCTTCGTCTGCGTCCTGACCCCACTGGTGGTGATGTTCCTTATTTACGTGCAGATCTTCGTCACGGTCAAACGTCAGTTGAGGAGGATTGCAGCAGAGCGGGGTGGCGCGACCAACACAGAGGGAACGGCGAAGATGAAGAAAGAGATGAAAATGGCCACGTCGCTCTTTCTGGTCCTCTTCCTTTTCACGCTCTTCACCAAGCCTCCGACTGCACGGGGCCCAGAGGTGTTGTACCTCGAGCTGTGGCAGGTGGCCTGGCCTACGTCGTCATGCGCCATTGGTCTTTCAGGCGTGAATAAAGGTGTCTTCAGCAGATATCTCAAGAGCGTGATATCCCATTGTCATGCGTTGTACCAAGTGAACTGACTGAATGGGAATGGAACAAAGCTTTTCGAAACTTTGCTTTGCAAAATGATTCACTCGAAACGCTGGTGATGCCAGTTGGTCAGAGCGGTGTAAATGCACCAAAAACATGCGTATAAAACACCTTTTACAAACCAAATCAAATGCAAATGTTTTATTAAAATCAAATCTATTAAATGCAATTAACAAATCATATAATACTATCAAATATGAAGAGTCAGTATATGTTGTTTAATTAAATTGTAAGGCTTGTTTTGTTTAATGGAGATCTTTGTTAATCATCCCAATAAGAGACAACTAACTACAACTCTTACTTTTTATTATGACAAACGTGTCATTAAAATGTCTACAAATGTATAAAAACTGATCCGAGTTCAGATATAGACATAGATACAGTTTCATGGGGTCACAAAGAACCATTGACATTTCGAAGTCTCGTTTATTGTTCATTGTTATTATTAAGTCACGTGATTTAGTTTCATGCGCGCTCTGAATCACTGGTTCGAAACAAATAATTCGCAAAGGTTTCGATGCTTCACTTCAAATCTTTCGTTTGAATTTAAAAATACATAAAATAACTGCGGTCAATAACTATAGTATTTAGGCCTGAACTGTAGTTATCATGGTAAGGGATGGGATGGGCAAACTTTGGCATCTGGGAACACTACTGAGCCTAGATTTTTATCATGATAAGATGAGAACAGAAAAAAAGATAAATACATTAATCTATTTTTTATTTCATTCATACATATAAATATAGGCCTATGAAATCATTCCATTATGCAAATTCACGTAATTGAATGTGTACTAGAAGAAAGAATACCATTCCATTTTCCGTGGAATGTTAGACAAATTCTACAAAAAGACTATAAAATCAGTTTGTGGTAAACGTGTCGTGTGGGTGTTAAGTGTGACATTTTCTATTTTTAAATAAGATCCTCTGATCATTAAACATTAATTATATGAAAGTATTTCCTGGTAAATAAA
>TU175037
ATTTAGTTTCATGCGCGCTCTGAATCACTGGTTCGAAACAAATAATTCGCAAAGGTTTCGATGCTTCACTTCAAATCTTTCGTTTGAATTTAAAAATACATAAAATAACTGCGGTCAATAACTATAGTATTTAGGCCTGAACTGTAGTTATCATGGTAAGGGATGGGATGGGCAAACTTTGGCATCTGGGAACACTACTGAGCC
>TU175039
GCCACCTACCCATCATTCCCTTTGTTCAGTCCAGCTCTTCACCAAGCCTCCGACTGCACGGGGCCCAGAGGTGTTGTACCTCGAGCTGTGGCAGGTGGCCTGGCCTACGTCGTCATGCGCCATTGGTCTTTCAGGCGTGAATAAAGGTGTCTTCAGCAGATATCTCAAGAGCGTGATATCCCATTGTCATGCGTTGTACCAAGTGAACTGACTGAATGGGAATGGAAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04071708_04075046.mRNA False 2317 mRNA 0.40 2 4070724 4075299
TU175037 False 204 lncRNA 0.38 1 4071037 4071240
TU175039 True 228 lncRNA 0.54 1 4071691 4071918

Neighbor

gene id symbol gene type direction distance location
CI01000029_04046704_04057783 NA coding downstream 12468 4046646 ~ 4058256 (-)
CI01000029_04017725_04032225 EFR3BB, CCL33.2, EFR3B coding downstream 38499 4017193 ~ 4032225 (-)
CI01000029_03988871_03998768 NA coding downstream 71956 3988590 ~ 3998768 (-)
CI01000029_03949550_03958610 NA coding downstream 111980 3949306 ~ 3958744 (-)
CI01000029_03942459_03946094 NA coding downstream 124630 3942436 ~ 3946094 (-)
CI01000029_04108560_04110587 MIXL1 coding upstream 33099 4108398 ~ 4110871 (-)
CI01000029_04115189_04121331 NA coding upstream 39864 4115163 ~ 4121331 (-)
CI01000029_04122433_04123725 TTC32 coding upstream 46909 4122208 ~ 4123725 (-)
CI01000029_04125071_04135324 MATN3, MATN3A coding upstream 49442 4124741 ~ 4135374 (-)
CI01000029_04138798_04141675 LAPTM4A, LAP4A coding upstream 63499 4138798 ~ 4141675 (-)
G154148 NA non-coding downstream 283 4069253 ~ 4070441 (-)
G154147 NA non-coding downstream 1902 4068588 ~ 4068822 (-)
G154146 NA non-coding downstream 5874 4064572 ~ 4064850 (-)
G154144 NA non-coding downstream 8302 4062182 ~ 4062422 (-)
G154140 NA non-coding downstream 13466 4056737 ~ 4057258 (-)
G154152 NA non-coding upstream 589 4075888 ~ 4076115 (-)
G154154 NA non-coding upstream 23671 4098970 ~ 4101128 (-)
G154169 NA non-coding upstream 160477 4235776 ~ 4236640 (-)
G154170 NA non-coding upstream 161463 4236762 ~ 4237074 (-)
G154171 NA non-coding upstream 163908 4239207 ~ 4239437 (-)
CI01000029_03698769_03707177 NA other downstream 363472 3698572 ~ 3707883 (-)
G153891 NA other downstream 784170 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1477922 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2776601 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 385044 4460159 ~ 4463540 (-)
G154415 NA other upstream 910809 4986108 ~ 4990990 (-)
G156542 NA other upstream 3095068 7170367 ~ 7170951 (-)
G156495 NA other upstream 3291028 7365007 ~ 7371921 (-)

Expression


Co-expression Network