Gene
RNA
| Item | Value |
|---|---|
| gene id | G154152 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 4075888 ~ 4076115 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU175040 | True | 228 | lncRNA | 0.31 | 1 | 4075888 | 4076115 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_04071708_04075046 | NA | coding | downstream | 589 | 4070724 ~ 4075299 (-) |
| CI01000029_04046704_04057783 | NA | coding | downstream | 17632 | 4046646 ~ 4058256 (-) |
| CI01000029_04017725_04032225 | EFR3BB, CCL33.2, EFR3B | coding | downstream | 43663 | 4017193 ~ 4032225 (-) |
| CI01000029_03988871_03998768 | NA | coding | downstream | 77120 | 3988590 ~ 3998768 (-) |
| CI01000029_03949550_03958610 | NA | coding | downstream | 117144 | 3949306 ~ 3958744 (-) |
| CI01000029_04108560_04110587 | MIXL1 | coding | upstream | 32283 | 4108398 ~ 4110871 (-) |
| CI01000029_04115189_04121331 | NA | coding | upstream | 39048 | 4115163 ~ 4121331 (-) |
| CI01000029_04122433_04123725 | TTC32 | coding | upstream | 46093 | 4122208 ~ 4123725 (-) |
| CI01000029_04125071_04135324 | MATN3, MATN3A | coding | upstream | 48626 | 4124741 ~ 4135374 (-) |
| CI01000029_04138798_04141675 | LAPTM4A, LAP4A | coding | upstream | 62683 | 4138798 ~ 4141675 (-) |
| G154148 | NA | non-coding | downstream | 5447 | 4069253 ~ 4070441 (-) |
| G154147 | NA | non-coding | downstream | 7066 | 4068588 ~ 4068822 (-) |
| G154146 | NA | non-coding | downstream | 11038 | 4064572 ~ 4064850 (-) |
| G154144 | NA | non-coding | downstream | 13466 | 4062182 ~ 4062422 (-) |
| G154154 | NA | non-coding | upstream | 22855 | 4098970 ~ 4101128 (-) |
| G154169 | NA | non-coding | upstream | 159661 | 4235776 ~ 4236640 (-) |
| G154170 | NA | non-coding | upstream | 160647 | 4236762 ~ 4237074 (-) |
| G154171 | NA | non-coding | upstream | 163092 | 4239207 ~ 4239437 (-) |
| G154172 | NA | non-coding | upstream | 165590 | 4241705 ~ 4241998 (-) |
| CI01000029_03698769_03707177 | NA | other | downstream | 368636 | 3698572 ~ 3707883 (-) |
| G153891 | NA | other | downstream | 789334 | 3248777 ~ 3286554 (-) |
| CI01000029_02589994_02592379 | NA | other | downstream | 1483086 | 2587549 ~ 2592379 (-) |
| CI01000029_01293143_01293964 | BATF3 | other | downstream | 2781765 | 1292249 ~ 1294123 (-) |
| CI01000029_04460778_04463540 | FKBP1B | other | upstream | 384228 | 4460159 ~ 4463540 (-) |
| G154415 | NA | other | upstream | 909993 | 4986108 ~ 4990990 (-) |
| G156542 | NA | other | upstream | 3094252 | 7170367 ~ 7170951 (-) |
| G156495 | NA | other | upstream | 3290212 | 7365007 ~ 7371921 (-) |
