G153952


Basic Information

Item Value
gene id G153952
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3348381 ~ 3358355 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU174830
AACTTTCGAACTCCACATTGCTGCCACAGACCCTCCTTTCCTCTAAAAGAAAACCAGAGCAACAGGATTGAACCTGTTCATCTACAGATTTAGCCTTGTGTCCACTTGCAACCGGATCACCTCCTCCATCATCACAACAACCATCACTCCTTCCTCCCTGCACGGCTCTCCACTCCACCTTGCGCTCTTTCCACGGCATGTGAGAGACCAGTGGCGCGATGTAACCTGCTCGACCTCCTTTTCACTGGCAAACAAGAAGAACTTCCACCTGGGGCCGAATACGCTTGGGCTACACGGCACCACGGCTGAACCCCAACAACCCTGGAAATCTCCATCCCATCAGCATGGATCTGACCAATAACCGAGGACTAAACCTGCTGCTCAACTTCCTGCTTATTGTAGTGGCTCTACTGCTCATGCTCATTCTGGTCAAGCTCATGTGACCTGAAAATGGCCCAAAACGAGAATAATCGGTATAAGAGACTCCCACTCACTCTACCTCCAAAACCATTTTAAAATTAGGCTGACTTCTACTAAACATCAGACAAACCTGTGCATGACTGACAGGCAGAAAATGCTTCTGATTGGTTAGTTTTCTAAAGTGGGCTAATCACTTTATTTTTTTTGGCTGTCACAGAGACTTTTTATTTCTCAGGAGTCAGCTCAGGACACATATTTCACTTAATTAAATCAGGCAGGAGGGACATTTTGTGAGTCTAGCGTTAAAAATATTGCATACAACACCTTTAACCTGCAACACACGCTTTGCTAGAGCTTAATGGAGGGGTACAGTAAATGATAAAAACAGTAAAAGAAAACAGAAAAACACCTGATCAAAATGGATTAAAAATGCTCCTACATTTTAGTTCAAAATATACTGAGGCTTTAAAACTGACAGGAAGTAGGTCCACATCATTGCTTCCAGCCTCACTGCACCCTCTAGTGGTTGTTGCCTCTTACTGCTCACAAAAACAACAACATAACCAGGATTAAAAATGGGATTTACCTCAAATTGAGATTCTTTTTCTTTGAACAGCAGGTTTGGATTTAAGTACATGGCCAAATGAAAATATAGACAAGCTCTCAAATCACATGACACACCACTGACACTATTCTTAAAAACACTACATATACATTTTTTTTTTTCTTGCTATAAAAGCTGTAGATATGCACTCCTAATTGGATGTATTTCATAAATAGAAGGACATAGTCATGGTTTTAATGAGAAAACACACTGGTTTGCCTATAATATAATCAAGGTTGCAACCTTTTTACATTATTTATACAATCACAATCACTGTGTTCTTGTTAATTTCTGTGTGAATATATTTATGAAGTAATGATATACATGTTCATAAAAAGGAATGAATTACTGTGCAATGCAGGTGCTTGAGAAATAAAACTGAATGGAAGTAAACGATGCAAATAAAACACTTCCACTGATAACAAATGTTTTTGTGTCTCTTTTGGCTGAATAAAACATTGAGAGCCTCAAGCAGAGATAATCAAAGACATCAGCAAATATTCAAGTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU174830 True 1534 lncRNA 0.40 3 3348381 3358355

Neighbor

gene id symbol gene type direction distance location
CI01000029_02957572_02962601 NA coding downstream 385027 2957427 ~ 2963354 (-)
CI01000029_02837412_02857934 NA coding downstream 490441 2836763 ~ 2857940 (-)
CI01000029_02764957_02770946 HSDL1 coding downstream 576988 2764957 ~ 2771393 (-)
CI01000029_02762066_02762926 CX32.3 coding downstream 584613 2761607 ~ 2763768 (-)
CI01000029_02753815_02761288 CX28.9 coding downstream 586854 2753748 ~ 2761527 (-)
CI01000029_03382508_03395312 NA coding upstream 23995 3382350 ~ 3395312 (-)
CI01000029_03397097_03444565 SLC35F1 coding upstream 37784 3396139 ~ 3444565 (-)
CI01000029_03503783_03509429 NUS1 coding upstream 145308 3503663 ~ 3509429 (-)
CI01000029_03534096_03563671 NA coding upstream 175697 3534052 ~ 3563671 (-)
CI01000029_03590053_03594170 VGLL2, VGLL2A coding upstream 231298 3589653 ~ 3594904 (-)
G153985 NA non-coding downstream 37400 3310710 ~ 3310981 (-)
G153373 NA non-coding downstream 299052 3049059 ~ 3049329 (-)
G153333 NA non-coding downstream 434150 2912932 ~ 2914231 (-)
G153299 NA non-coding downstream 472585 2875591 ~ 2875796 (-)
G153289 NA non-coding downstream 498007 2850037 ~ 2850374 (-)
G154017 NA non-coding upstream 215709 3574064 ~ 3574456 (-)
G154040 NA non-coding upstream 275630 3633985 ~ 3634543 (-)
G154046 NA non-coding upstream 329497 3687852 ~ 3688128 (-)
G154047 NA non-coding upstream 329872 3688227 ~ 3688470 (-)
G154057 NA non-coding upstream 377876 3736231 ~ 3740719 (-)
G153891 NA other downstream 61827 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 755579 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2054258 1292249 ~ 1294123 (-)
CI01000029_03698769_03707177 NA other upstream 347868 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1101988 4460159 ~ 4463540 (-)
G154415 NA other upstream 1627753 4986108 ~ 4990990 (-)
G156542 NA other upstream 3812012 7170367 ~ 7170951 (-)
G156495 NA other upstream 4007972 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location