RNA id: TU174830


Basic Information

Item Value
RNA id TU174830
length 1534
lncRNA type intronic
GC content 0.40
exon number 3
gene id G153952
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3348381 ~ 3358355 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTTTCGAACTCCACATTGCTGCCACAGACCCTCCTTTCCTCTAAAAGAAAACCAGAGCAACAGGATTGAACCTGTTCATCTACAGATTTAGCCTTGTGTCCACTTGCAACCGGATCACCTCCTCCATCATCACAACAACCATCACTCCTTCCTCCCTGCACGGCTCTCCACTCCACCTTGCGCTCTTTCCACGGCATGTGAGAGACCAGTGGCGCGATGTAACCTGCTCGACCTCCTTTTCACTGGCAAACAAGAAGAACTTCCACCTGGGGCCGAATACGCTTGGGCTACACGGCACCACGGCTGAACCCCAACAACCCTGGAAATCTCCATCCCATCAGCATGGATCTGACCAATAACCGAGGACTAAACCTGCTGCTCAACTTCCTGCTTATTGTAGTGGCTCTACTGCTCATGCTCATTCTGGTCAAGCTCATGTGACCTGAAAATGGCCCAAAACGAGAATAATCGGTATAAGAGACTCCCACTCACTCTACCTCCAAAACCATTTTAAAATTAGGCTGACTTCTACTAAACATCAGACAAACCTGTGCATGACTGACAGGCAGAAAATGCTTCTGATTGGTTAGTTTTCTAAAGTGGGCTAATCACTTTATTTTTTTTGGCTGTCACAGAGACTTTTTATTTCTCAGGAGTCAGCTCAGGACACATATTTCACTTAATTAAATCAGGCAGGAGGGACATTTTGTGAGTCTAGCGTTAAAAATATTGCATACAACACCTTTAACCTGCAACACACGCTTTGCTAGAGCTTAATGGAGGGGTACAGTAAATGATAAAAACAGTAAAAGAAAACAGAAAAACACCTGATCAAAATGGATTAAAAATGCTCCTACATTTTAGTTCAAAATATACTGAGGCTTTAAAACTGACAGGAAGTAGGTCCACATCATTGCTTCCAGCCTCACTGCACCCTCTAGTGGTTGTTGCCTCTTACTGCTCACAAAAACAACAACATAACCAGGATTAAAAATGGGATTTACCTCAAATTGAGATTCTTTTTCTTTGAACAGCAGGTTTGGATTTAAGTACATGGCCAAATGAAAATATAGACAAGCTCTCAAATCACATGACACACCACTGACACTATTCTTAAAAACACTACATATACATTTTTTTTTTTCTTGCTATAAAAGCTGTAGATATGCACTCCTAATTGGATGTATTTCATAAATAGAAGGACATAGTCATGGTTTTAATGAGAAAACACACTGGTTTGCCTATAATATAATCAAGGTTGCAACCTTTTTACATTATTTATACAATCACAATCACTGTGTTCTTGTTAATTTCTGTGTGAATATATTTATGAAGTAATGATATACATGTTCATAAAAAGGAATGAATTACTGTGCAATGCAGGTGCTTGAGAAATAAAACTGAATGGAAGTAAACGATGCAAATAAAACACTTCCACTGATAACAAATGTTTTTGTGTCTCTTTTGGCTGAATAAAACATTGAGAGCCTCAAGCAGAGATAATCAAAGACATCAGCAAATATTCAAGTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174864 lncRNA downstream 37400 3310710 ~ 3310981 (-) True G153985
TU174171 lncRNA downstream 299052 3049059 ~ 3049329 (-) True G153373
TU174126 lncRNA downstream 434150 2912932 ~ 2914231 (-) True G153333
TU174089 lncRNA downstream 472585 2875591 ~ 2875796 (-) True G153299
TU174079 lncRNA downstream 498007 2850037 ~ 2850374 (-) True G153289
TU174896 lncRNA upstream 215709 3574064 ~ 3574456 (-) True G154017
TU174924 lncRNA upstream 275630 3633985 ~ 3634543 (-) True G154040
TU174930 lncRNA upstream 329497 3687852 ~ 3688128 (-) True G154046
TU174931 lncRNA upstream 329872 3688227 ~ 3688470 (-) True G154047
TU174941 lncRNA upstream 377876 3736231 ~ 3740719 (-) True G154057
CI01000029_02957572_02962601.mRNA mRNA downstream 385027 2957427 ~ 2963354 (-) True CI01000029_02957572_02962601
CI01000029_02837412_02857934.mRNA mRNA downstream 490441 2836763 ~ 2857940 (-) True CI01000029_02837412_02857934
CI01000029_02764957_02770946.mRNA mRNA downstream 576988 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
CI01000029_02762066_02762926.mRNA mRNA downstream 584613 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02753815_02761288.mRNA mRNA downstream 586854 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_03382508_03395312.mRNA mRNA upstream 23995 3382350 ~ 3395312 (-) True CI01000029_03382508_03395312
CI01000029_03397097_03444565.mRNA mRNA upstream 37784 3396139 ~ 3444565 (-) True CI01000029_03397097_03444565
CI01000029_03503783_03509429.mRNA mRNA upstream 145308 3503663 ~ 3509429 (-) True CI01000029_03503783_03509429
CI01000029_03534096_03563671.mRNA mRNA upstream 175697 3534052 ~ 3563671 (-) True CI01000029_03534096_03563671
CI01000029_03590053_03594170.mRNA mRNA upstream 231298 3589653 ~ 3594904 (-) True CI01000029_03590053_03594170
TU174756 other downstream 61827 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 755579 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2054258 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174823 other upstream 347868 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1101988 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 1627753 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 1627830 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3812012 7170367 ~ 7170951 (-) False G156542

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU208419 False 1193 lncRNA 0.40 2 NC_056718.1 23343739 ~ 23351630 (+)