CI01000029_02753815_02761288 (CX28.9)


Basic Information

Item Value
gene id CI01000029_02753815_02761288
gene name CX28.9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2753748 ~ 2761527 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02753815_02761288.mRNA
ACATATTTATTTAAAAATCACATACAAAATTGTATATAAATAATCATATAAGACATTTTTTAAATATTTTAATCACAAATCAGGCTATAAGTGCTTAATTGCTAATATCTGATTAATTACCTTAATTATATTATTAATTGTTCTCTACCCTAGCTGCCTAGACACAAGTCGGGGACTGATCACCCCTGGCTGGGTCGCCTGGGCGAGGATGTATGTTGTTGAAAGACCCGAAACACCCGATGACCCCAGGTTACATCACTGATGATGTGTCTAGGTTGCACCTATTTCCAGGCAGAGAAGAAACTAGAGGCACAAGCATGGGAGAGTGGGGCTTTCTCTCCAAGCTGCTGGACAAAGTGCAGTCTCACTCCACGGTTGTTGGGAAGGTGTGGCTCACTGTCCTCTTTGTCTTCAGGATCATGGTTCTCGGGGCCGGGGCCGAAAAGGTGTGGAGCGATGAACAATCAAAAATGATCTGCAACACTAAGCAGCCGGGTTGTACGAACGTGTGCTACGATCACACCTTTCCAATCTCCCACGTTCGCTTCTGGGTCCTTCAGATCATCTTTGTATCCACGCCGACACTGCTATACTTCGGACACGTTGTGCACATCCTCCACAAAGAAAAGAAACTGATAAAGCAGATTGAAAGCTATACTGAAAAGCAAGGCATCAAACAACCCAAATACACTGACGATCATGGCAAAGTTATAATCAAGGGCCAATTGTTAGGTAGTTACCTAGTCAGCCTGTTTGTTAAGATCTTGCTGGAAGCTGCGTTTATTGTAGGCCAGTACTATATTTACGGTTTTATAATGATCCCTAAGATAGAATGCTCCCAATCTCCTTGCCCTCATACGGTTGAGTGTTACATGTCTCGTCCCACAGAGAAAACCATCTTTATCATCTTCATGCTGGTGGTGGCGTGTATCTCTCTGCTTTTGAACGTGATTGAGATGTTCTACCTGATATACCGCAGGTCAAAAAGACATCGTGGCACAAAGATGACCGCATTCCCGCAAGGTTTAAACGGATCCAAGGTGTATAGCTCAACTTAAGGGTGAAAAGATTGTTTGGTGTTGTAAGCTTGTACATAGATAAATGAGGCTGAATCTTGGTATTAAA

Function

NR:

description
Gap junction Cx32.2 protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02753815_02761288.mRNA True 1125 mRNA 0.43 2 2753748 2761527

Neighbor

gene id symbol gene type direction distance location
CI01000029_02742245_02743081 CX32.2 coding downstream 9524 2741953 ~ 2744224 (-)
CI01000029_02738375_02739517 GJA1, CX43 coding downstream 13509 2738054 ~ 2740239 (-)
CI01000029_02593889_02603627 HSF2 coding downstream 150121 2593391 ~ 2603627 (-)
CI01000029_02589994_02592379 NA coding downstream 161369 2587549 ~ 2592379 (-)
CI01000029_02539755_02540836 FABP7B, FABP7 coding downstream 212343 2539729 ~ 2542444 (-)
CI01000029_02762066_02762926 CX32.3 coding upstream 80 2761607 ~ 2763768 (-)
CI01000029_02764957_02770946 HSDL1 coding upstream 3430 2764957 ~ 2771393 (-)
CI01000029_02837412_02857934 NA coding upstream 75236 2836763 ~ 2857940 (-)
CI01000029_02957572_02962601 NA coding upstream 195900 2957427 ~ 2963354 (-)
CI01000029_03382508_03395312 NA coding upstream 620823 3382350 ~ 3395312 (-)
G153256 NA non-coding downstream 5438 2748097 ~ 2748310 (-)
G153251 NA non-coding downstream 22973 2730555 ~ 2730775 (-)
G153250 NA non-coding downstream 23587 2729894 ~ 2730161 (-)
G153248 NA non-coding downstream 27324 2726135 ~ 2726424 (-)
G153245 NA non-coding downstream 29908 2723608 ~ 2723840 (-)
G153259 NA non-coding upstream 51596 2813123 ~ 2814507 (-)
G153277 NA non-coding upstream 55075 2816602 ~ 2817026 (-)
G153279 NA non-coding upstream 60872 2822399 ~ 2822630 (-)
G153280 NA non-coding upstream 61537 2823064 ~ 2823301 (-)
G153281 NA non-coding upstream 63545 2825072 ~ 2825289 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1459625 1292249 ~ 1294123 (-)
G153891 NA other upstream 487250 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 944696 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1698816 4460159 ~ 4463540 (-)
G154415 NA other upstream 2224581 4986108 ~ 4990990 (-)
G156542 NA other upstream 4408840 7170367 ~ 7170951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018318 cx28.9 coding NC_007131.7 CM002904.2 40744754 ~ 40750953 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_03571631_03573352 NA misc CI01000069 null 3563293 ~ 3576335 (-)
striped catfish (Pangasianodon hypophthalmus) G264056 NA non-coding NC_047611.1 CM018557.1 5922310 ~ 5926306 (+)
bowfin (Amia calva) AMCG00004324 NA coding CM030121.1 CM030121.1 42914142 ~ 42920194 (-)