XLOC_018318 (cx28.9)


Basic Information

Item Value
gene id XLOC_018318
gene name cx28.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40744754 ~ 40750953 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036062
AATCATTGAGCAACGTAGTCAATCAGCAGCGGATTCAGACGCAGTTGTCACAGATTTGAACACTGCACCTTGAACGCTCTTATCTTTTGAACATCGGATTTTTGTCACAGTCCACACAGTTTTGCAGGTAGACAAGGCACTTCAGGCTCAAGCATGGGAGAATGGGGATTTCTCTCCAAGCTGCTGGACAAAGTGCAGTCTCACTCCACAGTGGTTGGGAAGGTGTGGCTCACGGTCCTGTTTGTCTTCAGGATCATGGTTCTCGGGGCTGGTGCTGAAAAGGTGTGGAGCGACGAACAATCAAAAATGATCTGCAACACGAAACAGCCTGGTTGCACGAACGTATGCTACGATCACACCTTTCCCATCTCCCATATTCGCTTCTGGGTTCTTCAAATCATCTTCGTGTCCACGCCAACACTTCTATACTTCGGCCACGTCCTGCATGTCCTCCACAAAGAAAAGAAACTGCGACACGAGATCGAATCCCATGCTGAAAAACAAGGCCTCAAACAGCCGAAATATATAGACGATTACGGCAAAGTCATAATCAAGGGCCAATTATTGGGTAGTTACCTAGCCAGCCTGTTTGTGAAGATCTTGCTAGAGGCCGCGTTTATCGTTGGCCAGTATTATATTTACGGTTTCATAATGATCCCGAAGATCGAATGCTCCCAGTCTCCTTGCCCTCATACAGTTGAGTGCTACATGTCCCGTCCCACAGAGAagaccatcttcatcatcttcatgcTGGTGGTGGCGTGCATCTCTCTGCTTCTGAACGTGGTTGAGATGTTCTACCTGATATGCCGCAGGTCAAAGAGACACCGCGCCGCAAAGATGACTTCATTTCATAAAGGTTTAAACGGATCCAAGGTGTACATTTCAGGAACTTCAAAGTCTAGCAAATCTTAagggtttaaaatattattatgctTGATGTTTAGAGCTTGGCCGTGGCTAAATGAGACTAAGATCTGGGAATTCAAATTTGTTTTGcagagtttttgttttgcttttaaatgatgCCCAGCTAACAGCTAGCATTTTaaagttcatttattttcctttagcttagtctctttatttatcaggagttgccacagtggaatgaagcaccaacttatccagcacatgttttacacagcccttccagctgcaacccagtactgagaaacatccatacactcattcacacacatgcactatggcctatttcattcattcattcattttcttttcggcttagttcctttattcatcaggggtcgccacagcggaatgaaccaccaacttattcagcatatgttttacacagcggatgccctttcagctgcatcccagtactggcaaacatctattaactcattcacacacatacactatgccaatttagtttattcgattcaTTTATAcagcgtgtctttggactgtgggggaaaccagagcacccaggggaaaccattccaacacagggagaacatgcaaactccacataaaaatgtcaaatggcccagccgggactcgagccagcaaccttcttgctgtgaggcggcagtgctaaccactgagccactgtgtcacccaatTCTAACGTTACACTATTAAAATAAACGTTCCTTATTGGCATTGACGGTTCCATGATGAAAAAGACTCTTTATAGAAAAACATTTTCTTTGGAGAACCAAAATATGTtctccatcactgggaaaacaatAGTTCCTCCTGGCACCTTTGTCTGTAAAAGTGTATAAATGTTTGTCTTCCACACGGTAAAAACaagttgattcaacttaaaatttataaggacatttttgagtttactcaacttacaTTGAGTCAAGTGCAGTAACTGGGTTGAAAGTtaagtaaactcaaaaatgtcatgaggttttttgctttaaaaatttaagaagtcaacttcttttttttttttttacagttaagtaaaattaataaaacatttatccggtgtctttaaaatgttctcaaaacataaaaacatcatactttttttgtaaaacatattttgatCTTAAACATTCAGGAACAATAATATTTCATAACTTGAGAATGCTAGTTCAGTTGGCTGGGATATTTTAAACAACGTTTGCACCAAAACTATTGTTTTATAGGATATTTCTGGTAATTTATTTTGTATGAACTATTTTTAACTTCTGACTTGTCATATATCCTGCCATTTATCTCATCTGATAACATGTGATAATAGTTCATTATGTAACAgtgttaatgcttttatttttctctttcaaTTTGGTTAAAGCTAACCTGATGGAGGAAAGCAATGATAGCTAATGAAGGCCTTGCTTTTTAGGTCAAGCTAATTTCTGCATTCATATGTATATTATGCTGTTAATCCTAAATTGTTTACTTTCTTAAATGTATATACAATGCATTTGTAAATATGTGTAATTATGTTTTAGCTTTCTTAAAACATAATAAAGTATTCCTCAGGTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000041797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036062 True 2480 mRNA 0.39 3 40744754 40750953

Neighbor

gene id symbol gene type direction distance location
XLOC_018317 cx32.2 coding downstream 15390 40724207 ~ 40729364 (-)
XLOC_018316 cx43 coding downstream 24224 40715163 ~ 40720530 (-)
XLOC_018315 hsf2 coding downstream 257470 40475576 ~ 40487284 (-)
XLOC_018314 pkib coding downstream 293639 40371897 ~ 40451115 (-)
XLOC_018313 fabp7b coding downstream 374018 40369257 ~ 40370736 (-)
XLOC_018319 cx32.3 coding upstream 2565 40753518 ~ 40755614 (-)
XLOC_018320 cx34.5 coding upstream 6188 40757141 ~ 40760217 (-)
XLOC_018321 hsdl1 coding upstream 10764 40761717 ~ 40766618 (-)
XLOC_018322 BX510919.2 coding upstream 477111 41228064 ~ 41228179 (-)
XLOC_018323 NA coding upstream 486751 41237704 ~ 41242669 (-)
XLOC_017928 CU539064.1 misc downstream 30691053 10053405 ~ 10053701 (-)
XLOC_018311 NA non-coding downstream 407855 40330106 ~ 40336899 (-)
XLOC_018309 NA non-coding downstream 490269 40215369 ~ 40254485 (-)
XLOC_018308 CR847530.1 non-coding downstream 824580 39919232 ~ 39920174 (-)
XLOC_018305 NA non-coding downstream 998317 39744195 ~ 39746437 (-)
XLOC_018303 BX936317.1 non-coding downstream 1058627 39601856 ~ 39686127 (-)
XLOC_018324 BX510919.3 non-coding upstream 601893 41352846 ~ 41352960 (-)
XLOC_018325 NA non-coding upstream 1159617 41910570 ~ 42173191 (-)
XLOC_018328 NA non-coding upstream 1469781 42220734 ~ 42241456 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_02753815_02761288 CX28.9 coding CI01000029 null 2753748 ~ 2761527 (-)