XLOC_018320 (cx34.5)


Basic Information

Item Value
gene id XLOC_018320
gene name cx34.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40757141 ~ 40760217 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036065
ACACATACATCTTTGTTGAGTCCCTGAGCAGTCTTTTCGAGCCTTCTctgtgcttttatatttgGAATTCAATTAACATTACAGATGGGCGAGTGGGATTTCCTCGGACGACTGCTGGATAGAGTCCAGACACACTCCACCGTAGTGGGAAAAATCTGGCTCACCGTCCTGTTTGTCTTCAGGATTCTAGTCCTTGGAGCCGGCGCTGAGAGAGTGTGGGGCGATGAGCAGTCCGACTTCATCTGCAACACAGAGCAACCGGGATGCGAAAACGTCTGCTACGACCGCGCGTTCCCAATCTCGCACGTCCGCTACTGGGTGCTTCAGATCATCTCTGTGTCCACGCCAACTCTGGCCTACCTGGGCCACGTCGTCCACGTCATACACGCCGAAAAGAAAGTGCGAGAGATGATGAAGAAAGAGCTTCAGAATGAGCAAATCAACCTCTTCCTCAAGAAAGGCTACAAAGTTCCCAAGTACAGCCGGGAAAACGGGAAGGTCAACATCCGTGGACGTCTTCTGAGAAGCTACATTCTGAGTTTGCTTTGTAAGATACTACTGGAGGTGGGTTTCATTTTGGGCCAATACTATCTTTATGGCTTCACTCTTAGGGCTCAATATGTCTGCAGCTATTTCCCGTGTCCTCACAAGGTGGACTGTTTTTTGTCGAGGCCCACTGAGAAAACCATCTTCATTTGGTTTATGCTGGTGGTGGCTTGCATTTCCTTGCTCCTAAATGTGATTGAGATCTTATATCTTTGCGCTAAGAAGATCAGCGAGTGTCTCAGCCGCAAAAAGGACTACACCATCACTCCGGTGACCCCTGTGGTGAGCAAAAAGAACTTTAAAAATACAGATCAGGTGATACAGAATTGGATGAACCGCGAGTTGGAGCTTCAGAGGAGGGAACCTGGCAATGAGGCGACCAAGAGCTTGGCTTCAGAGGGTCGCAGTGCTGACATGCAAGAGGTTCATATCTGATCAGCAGGCCTTTGTACACAAAGGCTTTCACACGGTCAACTAAAGCAAACAGTCAGTCATACAAAGTGACTCGTGCATGGTCATGACCGCCTGGCTTTAAGCACACGATGAGCTGcctctctctgtttaacagatcAATAATGTATTGCTGAAATTTGTGATGTTTTCCTTTTTCTTTATTGTGTCTAAAATTACTTTCTGTGTGAAGGTTCAATGCATTTTCAAAACTGTGACATGTAAACTGTTCTGTTTCaatctgtttctgtatttatacaaaaataaatgcatttgaatGCAGTTTatgtgcagcaaaaaaaaaataaaataaaaacattatataaagaTCA
>TCONS_00036066
ATGGGCGAGTGGGATTTCCTCGGACGACTGCTGGATAGAGTCCAGACACACTCCACCGTAGTGGGAAAAATCTGGCTCACCGTCCTGTTTGTCTTCAGGATTCTAGTCCTTGGAGCCGGCGCTGAGAGAGTGTGGGGCGATGAGCAGTCCGACTTCATCTGCAACACAGAGCAACCGGGATGCGAAAACGTCTGCTACGACCGCGCGTTCCCAATCTCGCACGTCCGCTACTGGGTGCTTCAGATCATCTCTGTGTCCACGCCAACTCTGGCCTACCTGGGCCACGTCGTCCACGTCATACACGCCGAAAAGAAAGTGCGAGAGATGATGAAGAAAGAGCTTCAGAATGAGCAAATCAACCTCTTCCTCAAGAAAGGCTACAAAGTTCCCAAGTACAGCCGGGAAAACGGGAAGGTCAACATCCGTGGACGTCTTCTGAGAAGCTACATTCTGAGTTTGCTTTGTAAGATACTACTGGAGGTGGGTTTCATTTTGGGCCAATACTATCTTTATGGCTTCACTCTTAGGGCTCAATATGTCTGCAGCTATTTCCCGTGTCCTCACAAGGTGGACTGTTTTTTGTCGAGGCCCACTGAGAAAACCATCTTCATTTGGTTTATGCTGGTGGTGGCTTGCATTTCCTTGCTCCTAAATGTGATTGAGATCTTATATCTTTGCGCTAAGAAGATCAGCGAGTGTCTCAGCCGCAAAAAGGACTACACCATCACTCCGGTGACCCCTGTGGTGAGCAAAAAGAACTTTAAAAATACAGATCAGGTGATACAGAATTGGATGAACCGCGAGTTGGAGCTTCAGAGGAGGGAACCTGGCAATGAGGCGACCAAGAGCTTGGCTTCAGAGGGTCGCAGTGCTGACATGCAAGAGGTTCATATCTGATCAGCAGGCCTTTGTACACAAAGGCTTTCACACGGTCAACTAAAGCAAACAGTCAGTCATACAAAGTGACTCGTGCATGGTCATGACCGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000069411

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036065 False 1328 mRNA 0.45 2 40757141 40760217
TCONS_00036066 True 987 lncRNA 0.50 1 40757398 40758384

Neighbor

gene id symbol gene type direction distance location
XLOC_018319 cx32.3 coding downstream 1527 40753518 ~ 40755614 (-)
XLOC_018318 cx28.9 coding downstream 6188 40744754 ~ 40750953 (-)
XLOC_018317 cx32.2 coding downstream 27777 40724207 ~ 40729364 (-)
XLOC_018316 cx43 coding downstream 36611 40715163 ~ 40720530 (-)
XLOC_018315 hsf2 coding downstream 269857 40475576 ~ 40487284 (-)
XLOC_018321 hsdl1 coding upstream 1500 40761717 ~ 40766618 (-)
XLOC_018322 BX510919.2 coding upstream 467847 41228064 ~ 41228179 (-)
XLOC_018323 NA coding upstream 477487 41237704 ~ 41242669 (-)
XLOC_018324 BX510919.3 coding upstream 592629 41352846 ~ 41352960 (-)
XLOC_018325 NA coding upstream 1150353 41910570 ~ 42173191 (-)
XLOC_017928 CU539064.1 misc downstream 30703440 10053405 ~ 10053701 (-)
XLOC_018311 NA non-coding downstream 420242 40330106 ~ 40336899 (-)
XLOC_018309 NA non-coding downstream 502656 40215369 ~ 40254485 (-)
XLOC_018308 CR847530.1 non-coding downstream 836967 39919232 ~ 39920174 (-)
XLOC_018305 NA non-coding downstream 1010704 39744195 ~ 39746437 (-)
XLOC_018303 BX936317.1 non-coding downstream 1071014 39601856 ~ 39686127 (-)
XLOC_018328 NA non-coding upstream 1460517 42220734 ~ 42241456 (-)

Expression


Co-expression Network