XLOC_018316 (cx43)


Basic Information

Item Value
gene id XLOC_018316
gene name cx43
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40715163 ~ 40720530 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036056
GCGTCTGCTTTCCACTTTCTTCCCTCTGACTCTCTTATAAGCAGGGAAAGTTTGACAAGTGTGCTTCAGTTTCTCCATAGTCGCGTACTTGGATTTGGTGACTGAACTTCAGAGGCGACGGAGTAAGTCCCTACAGGGCTCTCCACTCTTTACTTCTTTCCAGCTAGAACTCCCTCAAGATGGGTGACTGGAGTGCGTTGGGAAGGCTTCTTGACAAGGTGCAGGCCTACTCCACGGCCGGAGGGAAGGTCTGGCTCTCTGTGCTCTTCATCTTCCGGATCCTTGTTCTGGGAACAGCAGTGGAATCGGCCTGGGGTGACGAGCAGTCAGCTTTCAAGTGCAATACCCAGCAGCCTGGTTGCGAGAATGTCTGCTATGACAAATCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTTCAGATCATCTTCGTGTCCACGCCGACGCTCCTGTACCTGGCGCATGTCTTCTACCTGATGCGAAAGGAGGAGAAACTCAACCGTAAAGAAGAGGAGCTGAAGGCCGTGCAGAACGACGGCGGCGACGTTGAGCTCCATCTCAAGAAAATCGAGCTCAAGAAGTTTAAGCATGGCCTAGAGGAGCACGGCAAGGTGAAGATGAAGGGTAGCCTGCTGCGCACCTACATCTTCAGCATCATTTTCAAGTCCATCTGTGAGGTGGTCTTCCTGGTCATCCAATGGTACCTCTACGGCTTCAGCCTCTCTGCCGTGTACACATGCGAACGCACGCCTTGCCCTCATAGGGTGGACTGTTTCCTTTCTCGGCCCACCGAGAagaccatcttcatcatcttcatgcTAGTGGTTTCGCTCTTCTCGCTTTTGCTCAACATCATCGAGCTCTTCTACGTGCTCTTCAAACGAATCAAGGACCGCGTCAAAAGCCGACAAAACACACAGTTTCCCACTGGCACTTTGAGCCCCACGCCGAAGGAACTGTCTACGACCAAATACGCGTACTACAATGGTTGCTCCTCACCAACTGCACCGCTCTCACCAATGTCACCTCCAGGCTACAAACTGGCCACCGGCGAAAGGACCAACTCTTGCCGCAATTACAACAAGCAGGCTAATGAGCAGAATTGGGCCAACTACAGCACAGAACAGAATCGCTTGGGCCAGAATGGCAGCACCATCTCCAATTCACATGCACAAGCCTTCGACTACCCTGATGATACACATGAGCACAAGAAACTGACGCCAGGGCATGAGTTGCAGCCATTGGCGTTGATAGATGCACGGCCGTGCAGCCGTGCCAGCAGCCGCATGAGCAGTCGAGCGAGGCCTGATGACCTGGACGTCTAGCCATGCCACATCCCAACGCTAGAGGACTGACACAGGCAATGAGACATGCTCATCTCCTGTAACGAGGAGGCGAGGCTGAATCCTCGCAAGTTCCTCACTCTAGACTCTAGTCGATACAGAGACATAAAATTACTCACACTGCTGGAGGTACTATTCATTAACAATGATGTTGAAACTAGCAGAGCTAACATGCCCTAACTACCGAACAGTCaagggggctcgtccgggacgAACGGCACTGAACTTGCCACGTCTCTCAACTCAGCCCACCAGAACAGACCTTGGCGATGTGATTGATTTTTGTTGTGCTTGTTGAAATGCCACACAATGATTCCACTTTAACACTTTGCACTCCTACAGTTTGTGTAGATTTGTGTTCTAACCCCCCCTACAGTCGATCCCGGTTATAACGTCAATCGTTCGCATGATCTCAAATCCAACAGGGTGTTCACAGTcatgaattaatatttatttattcataaagatTAACATGATATCCACCACTAGATAAAGATTGACTACTACTCAAGGTCATGTCTACACAATTAATACCATCCAAGTGCATATTTATTGACAATAATCCAAATTCCAGCAATACGTTCAtcagcaaatgtgtttttttttttttttgttattaatcacAGTGGACTGTCATTTTCCTGATAAACTTTGAATTTATGTGGTGTTGGTTTTTGTTATTCGAtgatatttgttgtattttgggtGGTGGTATGAAACGGAAATGTCTTATATGTGGACTGAGCTGCTGTAACTTACACGGCttgattctttcttttttctgcatCTTGATTTTTACTGAATAGTATGAGAGAGAAAGGCTttatttttgttctcttttttatttcttattttcctttatttttggaGGGCAGACAgaatgatttagtttttttttttattagaatgaaTAGAAATTAACGTCTTACCTTTGGAGTGAATGACCTTTTTAACTCAATGTAATCGTTGCTGCTTGAGAGATAGAGACTTAGTACTGTAAATCAAGCTAATGTCACAAATGTGAGGTTTTTTTAGAAGACTGCTTTTTTAGAGCTGGACTAATATTTAGTCAGTTATATTAAGAGATATATGCCAGCGTAGCTCCACAACTACCAAACACTAGTAGATGAAATTTCATTATGGACATTCCTTGTTTTGATTCTTCAAATTGTGCATCATAGTATATTGGTACTCATTTGCAGAGGCTCATGGATTTTTCAGCTACAATGGTGTTTGCACTGAGATTTTGGCTAGGGTGTTATTTGATGCAAAAAAATGACGAAAAGTTCTCTGTTATGCAcgtaactaatttattttacatcACACTACGAGGCGTAAAAATCACTACACTTTAACAGTGCTCTCACATAATCCTTGGGTTTGAGATGTTGAGTGGCTAAGGCAAGATTGTGCATCTGGTGAATAGTGCAAATTTGGGTTTAAACTGATGTAATGGGAATCCGCTGTCGTACCGTGTGCATGACAGTGGAAAAACCGAGCAATCACAAACAAAAACGGACATTAATCAAATCTGTGAAAAAGCAATTTAACCAATAAAgattttttctttgtca
>TCONS_00036057
AAACTTTGTGCGTCTGCTTTCCACTTTCTTCCCTCTGACTCTCTTATAAGCAGGGAAAGTTTGACAAGTGTGCTTCAGTTTCTCCATAGTCGCGTACTTGGATTTGGTGACTGAACTTCAGAGGCGACGGAGTAAGTCCCTACAGGGCTCTCCACTCTTTACTTCTTTCCAGCTAGAACTCCCTCAAGATGGGTGACTGGAGTGCGTTGGGAAGGCTTCTTGACAAGTGCAATACCCAGCAGCCTGGTTGCGAGAATGTCTGCTATGACAAATCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTTCAGATCATCTTCGTGTCCACGCCGACGCTCCTGTACCTGGCGCATGTCTTCTACCTGATGCGAAAGGAGGAGAAACTCAACCGTAAAGAAGAGGAGCTGAAGGCCGTGCAGAACGACGGCGGCGACGTTGAGCTCCATCTCAAGAAAATCGAGCTCAAGAAGTTTAAGCATGGCCTAGAGGAGCACGGCAAGGTGAAGATGAAGGGTAGCCTGCTGCGCACCTACATCTTCAGCATCATTTTCAAGTCCATCTGTGAGGTGGTCTTCCTGGTCATCCAATGGTACCTCTACGGCTTCAGCCTCTCTGCCGTGTACACATGCGAACGCACGCCTTGCCCTCATAGGGTGGACTGTTTCCTTTCTCGGCCCACCGAGAagaccatcttcatcatcttcatgcTAGTGGTTTCGCTCTTCTCGCTTTTGCTCAACATCATCGAGCTCTTCTACGTGCTCTTCAAACGAATCAAGGACCGCGTCAAAAGCCGACAAAACACACAGTTTCCCACTGGCACTTTGAGCCCCACGCCGAAGGAACTGTCTACGACCAAATACGCGTACTACAATGGTTGCTCCTCACCAACTGCACCGCTCTCACCAATGTCACCTCCAGGCTACAAACTGGCCACCGGCGAAAGGACCAACTCTTGCCGCAATTACAACAAGCAGGCTAATGAGCAGAATTGGGCCAACTACAGCACAGAACAGAATCGCTTGGGCCAGAATGGCAGCACCATCTCCAATTCACATGCACAAGCCTTCGACTACCCTGATGATACACATGAGCACAAGAAACTGACGCCAGGGCATGAGTTGCAGCCATTGGCGTTGATAGATGCACGGCCGTGCAGCCGTGCCAGCAGCCGCATGAGCAGTCGAGCGAGGCCTGATGACCTGGACGTCTAGCCATGCCACATCCCAACGCTAGAGGACTGACACAGGCAATGAGACATGCTCATCTCCTGTAACGAGGAGGCGAGGCTGAATCCTCGCAAGTTCCTCACTCTAGACTCTAGTCGATACAGAGACATAAAATTACTCACACTGCTGGAGGTACTATTCATTAACAATGATGTTGAAACTAGCAGAGCTAACATGCCCTAACTACCGAACAGTCaagggggctcgtccgggacgAACGGCACTGAACTTGCCACGTCTCTCAACTCAGCCCACCAGAACAGACCTTGGCGATGTGATTGATTTTTGTTGTGCTTGTTGAAATGCCACACAATGATTCCACTTTAACACTTTGCACTCCTACAGTTTGTGTAGATTTGTGTTCTAACCCCCCCTACAGTCGATCCCGGTTATAACGTCAATCGTTCGCATGATCTCAAATCCAACAGGGTGTTCACAGTcatgaattaatatttatttattcataaagatTAACATGATATCCACCACTAGATAAAGATTGACTACTACTCAAGGTCATGTCTACACAATTAATACCATCCAAGTGCATATTTATTGACAATAATCCAAATTCCAGCAATACGTTCAtcagcaaatgtgtttttttttttttttgttattaatcacAGTGGACTGTCATTTTCCTGATAAACTTTGAATTTATGTGGTGTTGGTTTTTGTTATTCGAtgatatttgttgtattttgggtGGTGGTATGAAACGGAAATGTCTTATATGTGGACTGAGCTGCTGTAACTTACACGGCttgattctttcttttttctgcatCTTGATTTTTACTGAATAGTATGAGAGAGAAAGGCTttatttttgttctcttttttatttcttattttcctttatttttggaGGGCAGACAgaatgatttagtttttttttttattagaatgaaTAGAAATTAACGTCTTACCTTTGGAGTGAATGACCTTTTTAACTCAATGTAATCGTTGCTGCTTGAGAGATAGAGACTTAGTACTGTAAATCAAGCTAATGTCACAAATGTGAGGTTTTTTTAGAAGACTGCTTTTTTAGAGCTGGACTAATATTTAGTCAGTTATATTAAGAGATATATGCCAGCGTAGCTCCACAACTACCAAACACTAGTAGATGAAATTTCATTATGGACATTCCTTGTTTTGATTCTTCAAATTGTGCATCATAGTATATTGGTACTCATTTGCAGAGGCTCATGGATTTTTCAGCTACAATGGTGTTTGCACTGAGATTTTGGCTAGGGTGTTATTTGATGCAAAAAAATGACGAAAAGTTCTCTGTTATGCAcgtaactaatttattttacatcACACTACGAGGCGTAAAAATCACTACACTTTAACAGTGCTCTCACATAATCCTTGGGTTTGAGATGTTGAGTGGCTAAGGCAAGATTGTGCATCTGGTGAATAGTGCAAATTTGGGTTTAAACTGATGTAATGGGAATCCGCTGTCGTACCGTGTGCATGACAGTGGAAAAACCGAGCAATCACAAACAAAAACGGACATTAATCAAATCTGTGAAAAAGCAATTTAACCAATAAAgattttttctttgtca
>TCONS_00036058
ATGGGTGACTGGAGTGCGTTGGGAAGGCTTCTTGACAAGTGCAATACCCAGCAGCCTGGTTGCGAGAATGTCTGCTATGACAAATCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTTCAGATCATCTTCGTGTCCACGCCGACGCTCCTGTACCTGGCGCATGTCTTCTACCTGATGCGAAAGGAGGAGAAACTCAACCGTAAAGAAGAGGAGCTGAAGGCCGTGCAGAACGACGGCGGCGACGTTGAGCTCCATCTCAAGAAAATCGAGCTCAAGAAGTTTAAGCATGGCCTAGAGGAGCACGGCAAGGTGAAGATGAAGGGTAGCCTGCTGCGCACCTACATCTTCAGCATCATTTTCAAGTCCATCTGTGAGGTGGTCTTCCTGGTCATCCAATGGTACCTCTACGGCTTCAGCCTCTCTGCCGTGTACACATGCGAACGCACGCCTTGCCCTCATAGGGTGGACTGTTTCCTTTCTCGGCCCACCGAGAagaccatcttcatcatcttcatgcTAGTGGTTTCGCTCTTCTCGCTTTTGCTCAACATCATCGAGCTCTTCTACGTGCTCTTCAAACGAATCAAGGACCGCGTCAAAAGCCGACAAAACACACAGTTTCCCACTGGCACTTTGAGCCCCACGCCGAAGGAACTGTCTACGACCAAATACGCGTACTACAATGGTTGCTCCTCACCAACTGCACCGCTCTCACCAATGTCACCTCCAGGCTACAAACTGGCCACCGGCGAAAGGACCAACTCTTGCCGCAATTACAACAAGCAGGCTAATGAGCAGAATTGGGCCAACTACAGCACAGAACAGAATCGCTTGGGCCAGAATGGCAGCACCATCTCCAATTCACATGCACAAGCCTTCGACTACCCTGATGATACACATGAGCACAAGAAACTGACGCCAGGGCATGAGTTGCAGCCATTGGCGTTGATAGATGCACGGCCGTGCAGCCGTGCCAGCAGCCGCATGAGCAGTCGAGCGAGGCCTGATGACCTGGACGTCTAG
>TCONS_00036059
CTTCAGTTTCTCCATAGTCGCGTACTTGGATTTGGTGACTGAACTTCAGAGGCGACGGAGTAAGTCCCTACAGGGCTCTCCACTCTTTACTTCTTTCCAGCTAGAACTCCCTCAAGATGGGTGACTGGAGTGCGTTGGGAAGGCTTCTTGACAAGGTGCAGGCCTACTCCACGGCCGGAGGGAAGGTCTGGCTCTCTGTGCTCTTCATCTTCCGGATCCTTGTTCTGGGAACAGCAGTGGAATCGGCCTGGGGTGACGAGCAGTCAGCTTTCAAGTGCAATACCCAGCAGCCTGGTTGCGAGAATGTCTGCTATGACAAATCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTTCAGATCATCTTCGTGTCCACGCCGACGCTCCTGTACCTGGCGCATGTCTTCTACCTGATGCGAAAGGAGGAGAAACTCAACCCCTCTCTGCCGTGTACACATGCGAACGCACGCCTTGCCCTCATAGGGTGGACTGTTTCCTTTCTCGGCCCACCGAGAagaccatcttcatcatcttcatgcTAGTGGTTTCGCTCTTCTCGCTTTTGCTCAACATCATCGAGCTCTTCTACGTGCTCTTCAAACGAATCAAGGACCGCGTCAAAAGCCGACAAAACACACAGTTTCCCACTGGCACTTTGAGCCCCACGCCGAAGGAACTGTCTACGACCAAATACGCGTACTACAATGGTTGCTCCTCACCAACTGCACCGCTCTCACCAATGTCACCTCCAGGCTACAAACTGGCCACCGGCGAAAGGACCAACTCTTGCCGCAATTACAACAAGCAGGCTAATGAGCAGAATTGGGCCAACTACAGCACAGAACAGAATCGCTTGGGCCAGAATGGCAGCACCATCTCCAATTCACATGCACAAGCCTTCGACTACCCTGAT

Function

symbol description
cx43 gap junction alpha-1 protein

GO: NA

KEGG:

id description
ko04540 Gap junction
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko02000 Transporters

Ensembl:

ensembl_id ENSDARG00000041799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036056 False 2917 mRNA 0.45 2 40715163 40720521
TCONS_00036057 False 2806 mRNA 0.44 3 40715163 40720530
TCONS_00036058 False 1026 mRNA 0.54 2 40716755 40717900
TCONS_00036059 True 913 mRNA 0.53 3 40716887 40720458

Neighbor

gene id symbol gene type direction distance location
XLOC_018315 hsf2 coding downstream 227879 40475576 ~ 40487284 (-)
XLOC_018314 pkib coding downstream 264048 40371897 ~ 40451115 (-)
XLOC_018313 fabp7b coding downstream 344427 40369257 ~ 40370736 (-)
XLOC_018312 smpdl3a coding downstream 347670 40337423 ~ 40367493 (-)
XLOC_018311 NA coding downstream 378264 40330106 ~ 40336899 (-)
XLOC_018317 cx32.2 coding upstream 3677 40724207 ~ 40729364 (-)
XLOC_018318 cx28.9 coding upstream 24224 40744754 ~ 40750953 (-)
XLOC_018319 cx32.3 coding upstream 32988 40753518 ~ 40755614 (-)
XLOC_018320 cx34.5 coding upstream 36611 40757141 ~ 40760217 (-)
XLOC_018321 hsdl1 coding upstream 41187 40761717 ~ 40766618 (-)
XLOC_017928 CU539064.1 misc downstream 30661462 10053405 ~ 10053701 (-)
XLOC_018309 NA non-coding downstream 460678 40215369 ~ 40254485 (-)
XLOC_018308 CR847530.1 non-coding downstream 794989 39919232 ~ 39920174 (-)
XLOC_018305 NA non-coding downstream 968726 39744195 ~ 39746437 (-)
XLOC_018303 BX936317.1 non-coding downstream 1029036 39601856 ~ 39686127 (-)
XLOC_018322 BX510919.2 non-coding upstream 507534 41228064 ~ 41228179 (-)
XLOC_018323 NA non-coding upstream 517174 41237704 ~ 41242669 (-)
XLOC_018324 BX510919.3 non-coding upstream 632316 41352846 ~ 41352960 (-)
XLOC_018325 NA non-coding upstream 1190040 41910570 ~ 42173191 (-)
XLOC_018328 NA non-coding upstream 1500204 42220734 ~ 42241456 (-)

Expression


Co-expression Network