XLOC_018312 (smpdl3a)


Basic Information

Item Value
gene id XLOC_018312
gene name smpdl3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40337423 ~ 40367493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036049
AATATGAGCGACCCTGCAGGGCAGTTCCAGTGGCTGCAGGAAACACTTGAGCTGTCAAGACAAAGCATGGAGAAGGTCTATGTGATCGCGCACGTCCCCATCGGTTACCTACCCTTTGCTAAAAATACGACAGCCATGCGAGAAAACTACAATGAACAACTGGTCAAAATATTTCGCAACTACAGTGAGGTGGTGGAGGGTCAGTTTTATGGGCACACTCATCGGGACAGTATAATGGTTCTTTTGGATCAGCAAGGTAAACCTGTGAACTCCATATTTGTCACTCCTGCTGTTACACCCATCAAAAGTCAAATAGAGCCATTTTCAAACAACCCTGGTGTGCGTGCATATCTCTACCAACCTGACAGTTATACTTTGCTGGATATTTGGCAGTTCTATCTAAATCTCACTGAAGCAAACCTGGAGCAAAGGTCCGGGTGGAAGCTGGAATACATAATGACTGAGGCGTTTGGTATCGATGACATTCAGCCAGGCAGCTTGCAGGAACTCGCACTTAGTTCATCGTCCTGCCAGAAGCCGACAATTAACGTTGACATTTTAATTTCTGAATTCCTGCACAATGCCGGTGTTTTTTTCACTTATAAAGtctatttatCTCAAGTGTCTAATTGAACTGGTCTCTGTGTGTCTGGCCAGATGTCAACATTAGGAGCCACATGACCATCTGCTGTGCATTTATTATGGGTTATGCCAAGACTCTAATGTATTGAGCCTCAAACTATGACTGTAAGCAAAAGAGGCCTTGACATGGTTTTTTATCTTTTCAATGTGTCCCTTGTAGTAATGTTATAATATAATGCTGTTTTTTATGATTTACACTACCAGTCTGAGTTCtggaatatttattaaaaatgtttttaaaatgttttaaaa
>TCONS_00036050
GAAGGTTGCGCAAACCAGCAGTCACGTGAGATCCGCTGTTTTTCCTGTTTTGGTTTACACAACAAGAGTTTATAACAGTACCCAACTTAAACGTTCAGGAATGGCTTTATTCGttctgttatttttgttttgtcatgtttttaacTTGCAGGTTTCTTCTGCGCCAGTTAGTAATGTATTCAAACACCTGCAGACCGCATCTAAATTCTGGCATATCTCAGACCTGCACTTGGATCCGACCTACCATGTGACAGAAGACCATACCAAAGTGTGTTTTTCCTCCAAGGGTGTTCCTGCATTGGACCCGGGAGTGTTTGGAGATTTCCTCTGTGATTCTCCATACCAGCTTATTCTCTCAGCGTTCAGTTACATGAAGCAAGTGGACCTGCAGCCTGAGTTCATTATATGGACCGGGGACAGCCCTCCCCACGTCCCTAAAGAAGAGCTGTCCACTGATGTAGTGATCAATGTGATTGCTAATATGACCCGCACCATACAGCAGTTCTTCCCACAGATTCCTGTTTATCCTGCCCTGGGCAACCACGACTACTGGCCACAGgaTCAGTTTCCAACATCTGAGAATGCGATTTATGATGCTGTTGCCAAACTCTGGTCCCCATGGTTGAACCCAGCAGCTGTGGCTACTTTGCAAAAAGGAGGCTTTTACTCTCTTGTTATCAAACCTGGTCTGCGTCTGCTGAGTCTCAACACAAACCTGTACTACAGTCCTAATGAAGTGACTGTAAATATGAGCGACCCTGCAGGGCAGTTCCAGTGGCTGCAGGAAACACTTGAGCTGTCAAGACAAAGCATGGAGAAGGTCTATGTGATCGCGCACGTCCCCATCGGTTACCTACCCTTTGCTAAAAATACGACAGCCATGCGAGAAAACTACAATGAACAACTGGTCAAAATATTTCGCAACTACAGTGAGGTGGTGGAGGGTCAGTTTTATGGGCACACTCATCGGGACAGTATAATGGTTCTTTTGGATCAGCAAGGTAAACCTGTGAACTCCATATTTGTCACTCCTGCTGTTACACCCATCAAAAGTCAAATAGAGCCATTTTCAAACAACCCTGGTGTGCGTGCATATCTCTACCAACCTGACAGTTATACTTTGCTGGATATTTGGCAGTTCTATCTAAATCTCACTGAAGCAAACCTGGAGCAAAGGTCCGGGTGGAAGCTGGAATACATAATGACTGAGGCGTTTGGTATCGATGACATTCAGCCAGGCAGCTTGCAGGAACTCGCACTTAGTTCATCGTCCTGCCAGAAGCCGACAATTAACGTTGACATTTTAATTTCTGAATTCCTGCACAATGCCGGTGTTTTTTTCACTTATAAAGATGTCAACATTAGGAGCCACATGACCATCTGCTGTGCATTTATTATGGGTTATGCCAAGACTCTAATGTATTGAGCCTCAAACTATGACTGTAAGCAAAAGAGGCCTTGACATGGTTTTTTATCTTTTCAATGTGTCCCTTGTAGTAATGTTATAATATAATGCTGTTTTTTATGATTTACACTACCAGTCTGAGTTCtggaatatttattaaaaatgtttttaaaatgttttaaaa

Function

symbol description
smpdl3a Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3A (sphingomyelin phosphodiesterase acid like 3A).

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-61 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3A (sphingomyelin phosphodiesterase acid like 3A).

Ensembl:

ensembl_id ENSDARG00000053119

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036049 False 894 mRNA 0.41 6 40337423 40360571
TCONS_00036050 True 1589 mRNA 0.43 10 40337423 40367493

Neighbor

gene id symbol gene type direction distance location
XLOC_018311 NA coding downstream 524 40330106 ~ 40336899 (-)
XLOC_018310 clvs2 coding downstream 17533 40269891 ~ 40319890 (-)
XLOC_018309 NA coding downstream 82938 40215369 ~ 40254485 (-)
XLOC_018307 nkain2 coding downstream 217551 39806370 ~ 40119872 (-)
XLOC_018308 CR847530.1 coding downstream 417249 39919232 ~ 39920174 (-)
XLOC_018313 fabp7b coding upstream 1764 40369257 ~ 40370736 (-)
XLOC_018314 pkib coding upstream 4404 40371897 ~ 40451115 (-)
XLOC_018315 hsf2 coding upstream 108083 40475576 ~ 40487284 (-)
XLOC_018316 cx43 coding upstream 347670 40715163 ~ 40720530 (-)
XLOC_018317 cx32.2 coding upstream 356714 40724207 ~ 40729364 (-)
XLOC_017928 CU539064.1 misc downstream 30283722 10053405 ~ 10053701 (-)
XLOC_018305 NA non-coding downstream 590986 39744195 ~ 39746437 (-)
XLOC_018303 BX936317.1 non-coding downstream 651296 39601856 ~ 39686127 (-)
XLOC_018322 BX510919.2 non-coding upstream 860571 41228064 ~ 41228179 (-)
XLOC_018323 NA non-coding upstream 870211 41237704 ~ 41242669 (-)
XLOC_018324 BX510919.3 non-coding upstream 985353 41352846 ~ 41352960 (-)
XLOC_018325 NA non-coding upstream 1543077 41910570 ~ 42173191 (-)
XLOC_018328 NA non-coding upstream 1853241 42220734 ~ 42241456 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_02532272_02537205 SMPDL3A coding CI01000029 null 2532200 ~ 2537205 (-)