CI01000029_02532272_02537205 (SMPDL3A)


Basic Information

Item Value
gene id CI01000029_02532272_02537205
gene name SMPDL3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2532200 ~ 2537205 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02532272_02537205.mRNA
ACCTGCACTTGGATCCAACCTACCATGTCACAGAAGACCACACCAAAGTGTGTTTTTCCTCCAAGGGAGTTCCTGCATTGGACCCAGGAGTGTTTGGAGATTTCCTGTGTGATTCCCCATACCAGCTCATTCTCTCAGCGTTTAGTTACATGAAACAAGTGGACCTGCAGCCTGAGTTCATTATATGGACAGGAGACAGCCCTCCACATGTTCCTAAAGAAGAGCTGTCTACTGATGTAGTGATCAACGTTATTGCCAATATGACTCAAACCATACGTCAGTTCTTCCCACAGTTGCCGGTTTACCCTGCCCTGGGCAACCATGACTACTGGCCACAGGATCAGTTGCCAACGTCTGCGAATGCAATTTACGATGCTGTAGCAAAACTCTGGTCTCCGTGGTTGAACCCAGCAGCTGTAGCTACTTTGCAAAAAGGTGGCTTTTACTCTCTTGTGATCAAACCTGGCCTCCGTCTGGTGAGTCTCAACACAAACCTGTATTACAGTCCTAATGAAGTGACTGTAAATATGTCTGATCCTGCCGGGCAGTTCCAGTGGCTGCAGGAAACACTTGAGCTCTCAAGACAAAACATGGAGAAGGTCTATGTTATTGCTCACGTCCCCATCGGTTACCTACCCTATGCTATAAATACAACAGCCATCCGAGAAAGCTACAATGAACAACTGGTCAAAATATTTCGCAACTACAGTGACGTTGTTCAGGGTCAATTCTACGGTCACACTCATCGAGACAGCATAATGGTAATGCTGGATCACCAAGCTCAGTTACAGAACATTGATCATACTGATTTATGTACCATTAATGCATTTGTTCAAGGGAAACCTGTGAACTCTATATTTGTTACACCTGCTGTTACACCTATCAAAAGTCTATTGGAGCCATTTTCAAACAATCCTGGCCTCCGTGCGTATCTGTACCACCCTGAGAATTATGGTTTACTGGATATTTGGCAGTTCTATTTAAATCTCACAGAAGCAAACCTGGAACAAAAGTCAGAGTGGAAGTTGGAATACATTATGACTGAGGCTTTTAATATCGAAGACATTCAGCCCCACAACTTGCATGAACTTGCTCTTAGGTTCAAGCAGCCAAAGAGCAAAGCCTTTGAGAAGTATTTTAACCATTTTATGGTGAGCTACAACTTAACCATCACATGCGATGATATCTGCAAAACGCTTCAAGTGTGTGCTGTGCACTTTTTGGATCGCGAGACCTACTTGCAGTGCATTGCGAGTGCCGGGAGACAGAAAGATTGAGCTGATGTTACAGTTCTGGAGTAGATACTTCATTTTACTCACTTTAAATGGTTTTAATCTTTTTAGATTAAA

Function

symbol description
smpdl3a Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3A (sphingomyelin phosphodiesterase acid like 3A).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02532272_02537205.mRNA True 1349 mRNA 0.44 7 2532200 2537205

Neighbor

gene id symbol gene type direction distance location
CI01000029_02502175_02516608 CLVS2 coding downstream 14820 2502156 ~ 2517380 (-)
CI01000029_02359382_02359992 NA coding downstream 172208 2359013 ~ 2359992 (-)
CI01000029_02254888_02257580 NA coding downstream 274620 2254877 ~ 2257580 (-)
CI01000029_02231187_02248416 NA coding downstream 282709 2231187 ~ 2249491 (-)
CI01000029_02203122_02221481 TPD52L1 coding downstream 310719 2202780 ~ 2221481 (-)
CI01000029_02539755_02540836 FABP7B, FABP7 coding upstream 2524 2539729 ~ 2542444 (-)
CI01000029_02589994_02592379 NA coding upstream 51245 2587549 ~ 2592379 (-)
CI01000029_02593889_02603627 HSF2 coding upstream 56186 2593391 ~ 2603627 (-)
CI01000029_02738375_02739517 GJA1, CX43 coding upstream 200849 2738054 ~ 2740239 (-)
CI01000029_02742245_02743081 CX32.2 coding upstream 204748 2741953 ~ 2744224 (-)
G153124 NA non-coding downstream 40854 2490240 ~ 2491346 (-)
G153166 NA non-coding downstream 80734 2450954 ~ 2451466 (-)
G153165 NA non-coding downstream 83333 2448537 ~ 2448867 (-)
G153164 NA non-coding downstream 84358 2447615 ~ 2447842 (-)
G153163 NA non-coding downstream 84610 2447130 ~ 2447590 (-)
G153175 NA non-coding upstream 71066 2608271 ~ 2608590 (-)
G153176 NA non-coding upstream 74752 2611957 ~ 2612187 (-)
G153178 NA non-coding upstream 79548 2616753 ~ 2616955 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1238077 1292249 ~ 1294123 (-)
G153891 NA other upstream 711572 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 1169018 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1923138 4460159 ~ 4463540 (-)
G154415 NA other upstream 2448903 4986108 ~ 4990990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018312 smpdl3a coding NC_007131.7 CM002904.2 40337423 ~ 40367493 (-)