CI01000029_02738375_02739517 (GJA1, CX43)


Basic Information

Item Value
gene id CI01000029_02738375_02739517
gene name GJA1, CX43
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2738054 ~ 2740239 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02738375_02739517.mRNA
TTAGTCATGTTTTCTTCATGTTAAAGAGGCATTTAATATGTTTTAATCAGCAGATGATGTTGACTCGCTTTCTGTAAAAACTGTCATGGTAGCATTAACTTGAGAACTTTTGTTTCATAAAGCAAAAGACAGCAAGTGCTGGCAGTTATCTTTACAACCCTAAACCTAACCCCTATGTGTGTGAGCCACATGTTTGTTATCCGAGCTATCTGAGACCAGGTGTAGTTTATATTATGATAATCTTGAGGTCAGTTTTCATGATTATTTTCATAATAACATCCTCAGCAGGTGCTGAATCTAACACTTTCATCATGTGCTTTATGTGCAGAAAAATACACTACAGCGGCCTCAAAAAAAAAAAAAAAAGAAAAAGTATATGGACACTTAAGCCACACTTCAAAATGTACAAATGTCTTTGTATTACATAATATTAAAACCAAATGACTTTTTAATTTATATATATATATATATATATATATATATATATATATTAAATAAAAGTTATGCTAGTACGAACGAAGAGAACTGACTTCATACATTCACTAAGTGATGGACTATTTGGTTTAAAATACTAATGTTATTTGTTCAGAGATGTCAGTTTGATATTTTGCATCTAATACAAAGACATTCAGACATATTCAAGTGTCACAGAAGTGTCCAAAACTGTCTAAATACGTTTTATTACATCTGAGCTTTCTATTTTCAGCTAGAACTCCCTCAAGATGGGTGACTGGAGTGCATTGGGAAGACTTCTTGACAAGGTGCAGGCCTACTCCACGGCCGGAGGAAAGATCTGGCTCTCTGTGCTCTTCATCTTCCGGATCCTAGTTCTGGGAACAGCAGTGGAGTCGGCCTGGGGTGACGAGCAGTCAGCTTTCAAGTGCAATACCCAGCAGCCCGGTTGCGAGAACGTCTGTTATGACAAATCATTCCCCATCTCGCACGTGCGCTTCTGGGTGCTTCAGATCATCTTCGTGTCCACGCCTACGCTCCTGTACCTGGCGCACGTGTTCTACCTGATGCGCAAGGAGGTCAAGCTCAACCGCAAAGAGGAGGAGCTGAAGGCCGTGCAGAATGACGGTGGCGACGTCGAGGTCCATCTGAAGAAGATTGAGCACAAGAAGTTCAAGCACGGCCTGGAGGAGCACGGCAAGGTGAAGATGAAGGGCGCCCTGCTGCGCACCTACATTGTCAGCATCATTTTCAAGTCCGTCTTTGAGGTGGCCTTCCTGGTCATCCAGTGGTACATCTATGGCTTCACCCTGTCCGCTGTGTACACGTGCGAGCGTTCGCCCTGCCCCCATCGGGTGGACTGTTTCCTCTCTCGGCCAACGGAGAAGACCATCTTTATTATTTTCATGCTGGTGGTTTCGCTCGTCTCGCTTTTGCTCAACATCATAGAGCTCTTCTACGTGCTCTTCAAACGGATCAAGGACCGTGTGAAAGGCCAACAAAACCAGTTCCCCACCGGCACCTTGAGCCCTACACCGACCAAACTGTCCACGACCAAATATGCCTACTACAATGGCTGCTCCTCGCCGACTGCACCGCTCTCACCCATGTCGCCTCCGGGCTACAAACTAGCCACCGGCGAGCGGACCAACTCTTGTCGCAATTACAACAAGCAGGCCAACGAGCAAAACTGGGCCAACTACAGCACAGAACAGAACCGTTTAGGCCAGAACGGCAGCACCATCTCCAATTCGCACGCTCAGGCCTTCGACTTCCCCGACGACACGCACGATCCCAAGAAACTGACGCCAGGCCATGAGCTGCAGCCACTGGCGTTGATAGACGCCCGGCCGTGCAGCCGCGCCAGCAGCCGCATGAGCAGTCGAGCGAGGCCCGACGACCTGGACGTCTAGCCGTGCGACTCAGTGCCGCGTCACGACGCTAAAGGACTGACACAGGCAGTGAGAACTCCTGTACTGAGGGGGCGGGGCAAGTTCCTCTCTCTAGACTCTAGTCGATACAGAGACATAAAATTACTCACACTGCTGGAGGTACTATTCATTAATAATGATGTTGAAACTAGCAGAGCTAACATGCCCTAACAACCGAACAGCTAGTGGACTCAAAGGGGCACAAGTGGGGCCAAACCTGGCGTGTCTCTCGATTCTGCCCACCAGAATATGCCTTGGTGATGTGATTGATTTTGTTTGCTTGTTCGCATTGGGTTTATTAAA

Function

symbol description
gja1 Enables several functions, including alpha-tubulin binding activity; beta-catenin binding activity; and gap junction channel activity. Involved in several processes, including establishment of mitotic spindle orientation; negative regulation of gonadotropin secretion; and negative regulation of trophoblast cell migration. Located in several cellular components, including gap junction; intercalated disc; and tight junction. Implicated in several diseases, including autosomal recessive craniometaphyseal dysplasia; congenital heart disease (multiple); erythrokeratodermia variabilis (multiple); oculodentodigital dysplasia; and palmoplantar keratoderma and congenital alopecia 1. Biomarker of Huntington's disease; atrial fibrillation; cardiomyopathy (multiple); and tetralogy of Fallot.
cx43 gap junction alpha-1 protein

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K07372 GJA1, CX43; gap junction alpha-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02738375_02739517.mRNA True 2186 mRNA 0.47 1 2738054 2740239

Neighbor

gene id symbol gene type direction distance location
CI01000029_02593889_02603627 HSF2 coding downstream 134427 2593391 ~ 2603627 (-)
CI01000029_02589994_02592379 NA coding downstream 145675 2587549 ~ 2592379 (-)
CI01000029_02539755_02540836 FABP7B, FABP7 coding downstream 196649 2539729 ~ 2542444 (-)
CI01000029_02532272_02537205 SMPDL3A coding downstream 200849 2532200 ~ 2537205 (-)
CI01000029_02502175_02516608 CLVS2 coding downstream 220674 2502156 ~ 2517380 (-)
CI01000029_02742245_02743081 CX32.2 coding upstream 1714 2741953 ~ 2744224 (-)
CI01000029_02753815_02761288 CX28.9 coding upstream 13509 2753748 ~ 2761527 (-)
CI01000029_02762066_02762926 CX32.3 coding upstream 21368 2761607 ~ 2763768 (-)
CI01000029_02764957_02770946 HSDL1 coding upstream 24718 2764957 ~ 2771393 (-)
CI01000029_02837412_02857934 NA coding upstream 96524 2836763 ~ 2857940 (-)
G153251 NA non-coding downstream 7279 2730555 ~ 2730775 (-)
G153250 NA non-coding downstream 7893 2729894 ~ 2730161 (-)
G153248 NA non-coding downstream 11630 2726135 ~ 2726424 (-)
G153245 NA non-coding downstream 14214 2723608 ~ 2723840 (-)
G153244 NA non-coding downstream 15461 2722297 ~ 2722593 (-)
G153256 NA non-coding upstream 7858 2748097 ~ 2748310 (-)
G153259 NA non-coding upstream 72884 2813123 ~ 2814507 (-)
G153277 NA non-coding upstream 76363 2816602 ~ 2817026 (-)
G153279 NA non-coding upstream 82160 2822399 ~ 2822630 (-)
G153280 NA non-coding upstream 82825 2823064 ~ 2823301 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1443931 1292249 ~ 1294123 (-)
G153891 NA other upstream 508538 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 965984 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1720104 4460159 ~ 4463540 (-)
G154415 NA other upstream 2245869 4986108 ~ 4990990 (-)
G156542 NA other upstream 4430128 7170367 ~ 7170951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location