G153279


Basic Information

Item Value
gene id G153279
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2822399 ~ 2822630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU174069
GTCAATCTGATCCCTAAGATCTCTGTTAGCCTCTCTGCCATGACTCAGACCTTTCTGCGGTGATGTCTGTCATTAATGTTTCAGAGCTGAAAGCGCTCCTTCGAGACTGTTGCTTGTCTACTGATGGGGCTGTATTGATAAATGAAAAGCATTAAGCAGAAGCTTGTTTGATCTGCTCAGTGGAGGAAGCCTCGGAAACTGCTGGCATACCAATTTACACCCATCATTTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174069 True 232 lncRNA 0.45 1 2822399 2822630

Neighbor

gene id symbol gene type direction distance location
CI01000029_02764957_02770946 HSDL1 coding downstream 51006 2764957 ~ 2771393 (-)
CI01000029_02762066_02762926 CX32.3 coding downstream 58631 2761607 ~ 2763768 (-)
CI01000029_02753815_02761288 CX28.9 coding downstream 60872 2753748 ~ 2761527 (-)
CI01000029_02742245_02743081 CX32.2 coding downstream 78175 2741953 ~ 2744224 (-)
CI01000029_02738375_02739517 GJA1, CX43 coding downstream 82160 2738054 ~ 2740239 (-)
CI01000029_02837412_02857934 NA coding upstream 14133 2836763 ~ 2857940 (-)
CI01000029_02957572_02962601 NA coding upstream 134797 2957427 ~ 2963354 (-)
CI01000029_03382508_03395312 NA coding upstream 559720 3382350 ~ 3395312 (-)
CI01000029_03397097_03444565 SLC35F1 coding upstream 573509 3396139 ~ 3444565 (-)
CI01000029_03503783_03509429 NUS1 coding upstream 681033 3503663 ~ 3509429 (-)
G153277 NA non-coding downstream 5373 2816602 ~ 2817026 (-)
G153259 NA non-coding downstream 7892 2813123 ~ 2814507 (-)
G153256 NA non-coding downstream 74089 2748097 ~ 2748310 (-)
G153251 NA non-coding downstream 91624 2730555 ~ 2730775 (-)
G153250 NA non-coding downstream 92238 2729894 ~ 2730161 (-)
G153280 NA non-coding upstream 434 2823064 ~ 2823301 (-)
G153281 NA non-coding upstream 2442 2825072 ~ 2825289 (-)
G153282 NA non-coding upstream 6628 2829258 ~ 2829463 (-)
G153283 NA non-coding upstream 12642 2835272 ~ 2835498 (-)
G153284 NA non-coding upstream 12947 2835577 ~ 2835779 (-)
CI01000029_02589994_02592379 NA other downstream 229597 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1528276 1292249 ~ 1294123 (-)
G153891 NA other upstream 426147 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 883593 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1637713 4460159 ~ 4463540 (-)
G154415 NA other upstream 2163478 4986108 ~ 4990990 (-)
G156542 NA other upstream 4347737 7170367 ~ 7170951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G141439 NA non-coding NC_056718.1 CM032087.1 23782508 ~ 23782720 (+)