CI01000029_02764957_02770946 (HSDL1)


Basic Information

Item Value
gene id CI01000029_02764957_02770946
gene name HSDL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2764957 ~ 2771393 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02764957_02770946.mRNA
CGTTTCTATGGAAACAAGCACAGCTGAGATGAAGCATCCGCAATAGCGCTTACAAAACAACTGTCAAATGCAAAAATACGCTTCACGGCACAGCCGTATGAATATATTCCGTGTCTAGTAATATTTACGACAGCGAATATTAAAAATTAAGACGATAAAACCAAAGAAAGAAAGAAGAAAGGTGATGTTTGCATGTGTTTGACGCTGACTGAAGACGCCAGTGTTGATCACGTGACGGGAGTGTATCACGTGACTTTTTAAATGTTCCGGGTTTCCTGATTCAGATGATGCGACAGGACTGAAGAGGAGAATCTGGTGAAATAGTACTTGTATTAAAAAACATAGACAGGCTTGTTGAGTGCAGACTAAATCATTGAATATAAAAGATTATTATTTTTCCATTGGCAGCTAATTTAGAGTAAACAGTTTTACAAATTTCAGCTTATAATGGCCGCTGTTGACAGCTTCCAGCTTTTGTATAGAGAAATTGCCAGATCATGCAGCTGTTATGTGGAAACGTTGGCGCTCGTGGGTGCATGTTACACAGCCAGCAAGGCTGTTATTTTTATGAGGGACTGCTATAGTCTGATAAGGCTTCATTTTATTCCTCGACTTGTGTGCCATAGAGATCTTAGTCAGCAATATGGACAATGGGCTGTCATTTATGGCGCTTCAGAGGAAATAGCAAAAGCATATGCAGAGGAACTGGCCAGGCATGGCATCTCTGTGATTCTGATCAGCAATGATATCAGTAATGTGGCTGACACTGCCAAAGCCATCTCAGACACTCATGGGGTAGAGGCCATTTGGATTGAGGCTGATTTCAGTAAGGGGGCCTCGGCCTGCAAACCTATAAAAAATGCTATCGTCGGTAAAGATATTGGATTCATCGTTAACAGTCTAGATGGGTCTCTGGACTCCTCTCAAGACTTCACAGACCTCTCTGAATGTGTAGTAGGGGACACTATCAACAGAAATATAGTAGCTGCCACTCTTGTCACACGCCTGGCACTGCCCTCTATGGTGGAGAGGGGAAAAGGAGCAGTGGTCAACATTTCTGCTGGGCGCTGTTTGCGTCCGACTCCTAGAAAGGCTGCTCTCTCTGCATCCACGGCCTTTCTCGATAACTTCAGTCGCTCTTTGCATTATGAATATGGTAATCGTGGAGTCTTCGTGCAGAGTTTGCTGCCTTTAAGAGTCGCATCTCAAAGATCTGAGGATTACGGTTCTGCTGGCTGGCTGGTGCCAAGCCCACAAGTGTATGCCAGCCATGCCCTTTCAACTCTGGGCGTCTCTCACCGAACCACAGGATACTGGCCTCACACCATACAGGAAGTAGATGGCTTTGAGAAATCCTGTTACACACATCTCCCTCGAGTCTTCGCTGAGCGAGTGAGCCTTCTTCTCCGTCTTCTTATATTTGGGCAAAAAACCTTGGTTCCTGTGAATTCGATTAACATTACAATGGGTGAGTGGGACTTCCTAGGAAGACTGCTGGATAGAGTCCAGACGCACTCAACGGTGGTGGGAAAAATCTGGCTCACCGTCCTGTTTGTGTTTAGGATTCTAGTCCTCTGCGCCGGTGCAGAGAGAGTGTGGGGTGACGAGCAGTCGGACTTCATCTGCAACACAGAGCAGCCGGGGTGCGAAAATGTGTGCTACGACCAGGCGTTCCCCATCTCGCATATCCGATTCTGGGTACTGCAGATCATCTCTGTGTCCACACCTACTCTGGCCTACCTGGGCCACGTCGTCCACGTCATACACGTCGAGAAGAAAGTGAGAAAGATGATGAAGAAAGAGTTTCAGAATGAGCAAATCAGTCTGTTCCTCAAGAAAGGCTACAAATTTCCCAAGTACAGCAGGGACAATGGGAAG

Function

symbol description
hsdl1 Located in mitochondrion. Is expressed in lens and solid lens vesicle. Orthologous to human HSDL1 (hydroxysteroid dehydrogenase like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02764957_02770946.mRNA True 1878 mRNA 0.46 6 2764957 2771393

Neighbor

gene id symbol gene type direction distance location
CI01000029_02762066_02762926 CX32.3 coding downstream 1189 2761607 ~ 2763768 (-)
CI01000029_02753815_02761288 CX28.9 coding downstream 3430 2753748 ~ 2761527 (-)
CI01000029_02742245_02743081 CX32.2 coding downstream 20733 2741953 ~ 2744224 (-)
CI01000029_02738375_02739517 GJA1, CX43 coding downstream 24718 2738054 ~ 2740239 (-)
CI01000029_02593889_02603627 HSF2 coding downstream 161330 2593391 ~ 2603627 (-)
CI01000029_02837412_02857934 NA coding upstream 65370 2836763 ~ 2857940 (-)
CI01000029_02957572_02962601 NA coding upstream 186034 2957427 ~ 2963354 (-)
CI01000029_03382508_03395312 NA coding upstream 610957 3382350 ~ 3395312 (-)
CI01000029_03397097_03444565 SLC35F1 coding upstream 624746 3396139 ~ 3444565 (-)
CI01000029_03503783_03509429 NUS1 coding upstream 732270 3503663 ~ 3509429 (-)
G153256 NA non-coding downstream 16647 2748097 ~ 2748310 (-)
G153251 NA non-coding downstream 34182 2730555 ~ 2730775 (-)
G153250 NA non-coding downstream 34796 2729894 ~ 2730161 (-)
G153248 NA non-coding downstream 38533 2726135 ~ 2726424 (-)
G153245 NA non-coding downstream 41117 2723608 ~ 2723840 (-)
G153259 NA non-coding upstream 41730 2813123 ~ 2814507 (-)
G153277 NA non-coding upstream 45209 2816602 ~ 2817026 (-)
G153279 NA non-coding upstream 51006 2822399 ~ 2822630 (-)
G153280 NA non-coding upstream 51671 2823064 ~ 2823301 (-)
G153281 NA non-coding upstream 53679 2825072 ~ 2825289 (-)
CI01000029_02589994_02592379 NA other downstream 172155 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1470834 1292249 ~ 1294123 (-)
G153891 NA other upstream 477384 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 934830 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1688950 4460159 ~ 4463540 (-)
G154415 NA other upstream 2214715 4986108 ~ 4990990 (-)
G156542 NA other upstream 4398974 7170367 ~ 7170951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location