G153175


Basic Information

Item Value
gene id G153175
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2608271 ~ 2608590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU173960
CACAATCATGGGGAAGACTGCTGACTTGACAGTTGTCCAAAAAACGACCATTGACACCTTGCACAAGGAGGGCAAGACACAAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGAGAGGCGAAAGGGAAGGAAAAGATGTGGTAGAAAAAAGTGTACAAGCAATAGGGATAACCGCAACCTGGAGAGGATTGTGAAACAAAACCCATTCAAAAATGTGGGGGAGATTCACAAAGAGTGGACTGCAGCTGGAGTCAGTGCTTCAAGAATGACTACGCACAGACGTATGCAAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU173960 True 320 lncRNA 0.46 1 2608271 2608590

Neighbor

gene id symbol gene type direction distance location
CI01000029_02593889_02603627 HSF2 coding downstream 4644 2593391 ~ 2603627 (-)
CI01000029_02589994_02592379 NA coding downstream 15892 2587549 ~ 2592379 (-)
CI01000029_02539755_02540836 FABP7B, FABP7 coding downstream 66866 2539729 ~ 2542444 (-)
CI01000029_02532272_02537205 SMPDL3A coding downstream 71066 2532200 ~ 2537205 (-)
CI01000029_02502175_02516608 CLVS2 coding downstream 90891 2502156 ~ 2517380 (-)
CI01000029_02738375_02739517 GJA1, CX43 coding upstream 129464 2738054 ~ 2740239 (-)
CI01000029_02742245_02743081 CX32.2 coding upstream 133363 2741953 ~ 2744224 (-)
CI01000029_02753815_02761288 CX28.9 coding upstream 145158 2753748 ~ 2761527 (-)
CI01000029_02762066_02762926 CX32.3 coding upstream 153017 2761607 ~ 2763768 (-)
CI01000029_02764957_02770946 HSDL1 coding upstream 156367 2764957 ~ 2771393 (-)
G153124 NA non-coding downstream 116925 2490240 ~ 2491346 (-)
G153166 NA non-coding downstream 156805 2450954 ~ 2451466 (-)
G153165 NA non-coding downstream 159404 2448537 ~ 2448867 (-)
G153176 NA non-coding upstream 3367 2611957 ~ 2612187 (-)
G153178 NA non-coding upstream 8163 2616753 ~ 2616955 (-)
G153179 NA non-coding upstream 9224 2617814 ~ 2618042 (-)
G153180 NA non-coding upstream 9527 2618117 ~ 2618321 (-)
G153181 NA non-coding upstream 10125 2618715 ~ 2618950 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1314148 1292249 ~ 1294123 (-)
G153891 NA other upstream 640187 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 1097633 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1851753 4460159 ~ 4463540 (-)
G154415 NA other upstream 2377518 4986108 ~ 4990990 (-)
G156542 NA other upstream 4561777 7170367 ~ 7170951 (-)

Expression


Co-expression Network