RNA id: TCONS_00036056


Basic Information

Item Value
RNA id TCONS_00036056
length 2917
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_018316
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40715163 ~ 40720530 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTCTGCTTTCCACTTTCTTCCCTCTGACTCTCTTATAAGCAGGGAAAGTTTGACAAGTGTGCTTCAGTTTCTCCATAGTCGCGTACTTGGATTTGGTGACTGAACTTCAGAGGCGACGGAGTAAGTCCCTACAGGGCTCTCCACTCTTTACTTCTTTCCAGCTAGAACTCCCTCAAGATGGGTGACTGGAGTGCGTTGGGAAGGCTTCTTGACAAGGTGCAGGCCTACTCCACGGCCGGAGGGAAGGTCTGGCTCTCTGTGCTCTTCATCTTCCGGATCCTTGTTCTGGGAACAGCAGTGGAATCGGCCTGGGGTGACGAGCAGTCAGCTTTCAAGTGCAATACCCAGCAGCCTGGTTGCGAGAATGTCTGCTATGACAAATCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTTCAGATCATCTTCGTGTCCACGCCGACGCTCCTGTACCTGGCGCATGTCTTCTACCTGATGCGAAAGGAGGAGAAACTCAACCGTAAAGAAGAGGAGCTGAAGGCCGTGCAGAACGACGGCGGCGACGTTGAGCTCCATCTCAAGAAAATCGAGCTCAAGAAGTTTAAGCATGGCCTAGAGGAGCACGGCAAGGTGAAGATGAAGGGTAGCCTGCTGCGCACCTACATCTTCAGCATCATTTTCAAGTCCATCTGTGAGGTGGTCTTCCTGGTCATCCAATGGTACCTCTACGGCTTCAGCCTCTCTGCCGTGTACACATGCGAACGCACGCCTTGCCCTCATAGGGTGGACTGTTTCCTTTCTCGGCCCACCGAGAagaccatcttcatcatcttcatgcTAGTGGTTTCGCTCTTCTCGCTTTTGCTCAACATCATCGAGCTCTTCTACGTGCTCTTCAAACGAATCAAGGACCGCGTCAAAAGCCGACAAAACACACAGTTTCCCACTGGCACTTTGAGCCCCACGCCGAAGGAACTGTCTACGACCAAATACGCGTACTACAATGGTTGCTCCTCACCAACTGCACCGCTCTCACCAATGTCACCTCCAGGCTACAAACTGGCCACCGGCGAAAGGACCAACTCTTGCCGCAATTACAACAAGCAGGCTAATGAGCAGAATTGGGCCAACTACAGCACAGAACAGAATCGCTTGGGCCAGAATGGCAGCACCATCTCCAATTCACATGCACAAGCCTTCGACTACCCTGATGATACACATGAGCACAAGAAACTGACGCCAGGGCATGAGTTGCAGCCATTGGCGTTGATAGATGCACGGCCGTGCAGCCGTGCCAGCAGCCGCATGAGCAGTCGAGCGAGGCCTGATGACCTGGACGTCTAGCCATGCCACATCCCAACGCTAGAGGACTGACACAGGCAATGAGACATGCTCATCTCCTGTAACGAGGAGGCGAGGCTGAATCCTCGCAAGTTCCTCACTCTAGACTCTAGTCGATACAGAGACATAAAATTACTCACACTGCTGGAGGTACTATTCATTAACAATGATGTTGAAACTAGCAGAGCTAACATGCCCTAACTACCGAACAGTCaagggggctcgtccgggacgAACGGCACTGAACTTGCCACGTCTCTCAACTCAGCCCACCAGAACAGACCTTGGCGATGTGATTGATTTTTGTTGTGCTTGTTGAAATGCCACACAATGATTCCACTTTAACACTTTGCACTCCTACAGTTTGTGTAGATTTGTGTTCTAACCCCCCCTACAGTCGATCCCGGTTATAACGTCAATCGTTCGCATGATCTCAAATCCAACAGGGTGTTCACAGTcatgaattaatatttatttattcataaagatTAACATGATATCCACCACTAGATAAAGATTGACTACTACTCAAGGTCATGTCTACACAATTAATACCATCCAAGTGCATATTTATTGACAATAATCCAAATTCCAGCAATACGTTCAtcagcaaatgtgtttttttttttttttgttattaatcacAGTGGACTGTCATTTTCCTGATAAACTTTGAATTTATGTGGTGTTGGTTTTTGTTATTCGAtgatatttgttgtattttgggtGGTGGTATGAAACGGAAATGTCTTATATGTGGACTGAGCTGCTGTAACTTACACGGCttgattctttcttttttctgcatCTTGATTTTTACTGAATAGTATGAGAGAGAAAGGCTttatttttgttctcttttttatttcttattttcctttatttttggaGGGCAGACAgaatgatttagtttttttttttattagaatgaaTAGAAATTAACGTCTTACCTTTGGAGTGAATGACCTTTTTAACTCAATGTAATCGTTGCTGCTTGAGAGATAGAGACTTAGTACTGTAAATCAAGCTAATGTCACAAATGTGAGGTTTTTTTAGAAGACTGCTTTTTTAGAGCTGGACTAATATTTAGTCAGTTATATTAAGAGATATATGCCAGCGTAGCTCCACAACTACCAAACACTAGTAGATGAAATTTCATTATGGACATTCCTTGTTTTGATTCTTCAAATTGTGCATCATAGTATATTGGTACTCATTTGCAGAGGCTCATGGATTTTTCAGCTACAATGGTGTTTGCACTGAGATTTTGGCTAGGGTGTTATTTGATGCAAAAAAATGACGAAAAGTTCTCTGTTATGCAcgtaactaatttattttacatcACACTACGAGGCGTAAAAATCACTACACTTTAACAGTGCTCTCACATAATCCTTGGGTTTGAGATGTTGAGTGGCTAAGGCAAGATTGTGCATCTGGTGAATAGTGCAAATTTGGGTTTAAACTGATGTAATGGGAATCCGCTGTCGTACCGTGTGCATGACAGTGGAAAAACCGAGCAATCACAAACAAAAACGGACATTAATCAAATCTGTGAAAAAGCAATTTAACCAATAAAgattttttctttgtca

Function

GO: NA

KEGG:

id description
ko04540 Gap junction
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko02000 Transporters

Ensembl:

ensembl_id ENSDART00000061261

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036055 lncRNA downstream 230198 40479929 ~ 40484965 (-) True XLOC_018315
TCONS_00036491 lncRNA downstream 378264 40330106 ~ 40336899 (-) True XLOC_018311
TCONS_00036944 lncRNA downstream 460678 40215369 ~ 40254485 (-) True XLOC_018309
TCONS_00036943 lncRNA downstream 460683 40215369 ~ 40254480 (-) False XLOC_018309
TCONS_00036942 lncRNA downstream 695945 39893074 ~ 40019218 (-) False XLOC_018307
TCONS_00036066 lncRNA upstream 36877 40757398 ~ 40758384 (-) True XLOC_018320
TCONS_00036945 lncRNA upstream 517183 41237704 ~ 41242669 (-) True XLOC_018323
TCONS_00036074 lncRNA upstream 1190049 41910570 ~ 41926435 (-) False XLOC_018325
TCONS_00036073 lncRNA upstream 1190049 41910570 ~ 41926474 (-) False XLOC_018325
TCONS_00036946 lncRNA upstream 1190049 41910570 ~ 42173191 (-) False XLOC_018325
TCONS_00036054 mRNA downstream 227879 40475576 ~ 40487284 (-) False XLOC_018315
TCONS_00036053 mRNA downstream 227955 40475576 ~ 40487208 (-) False XLOC_018315
TCONS_00036052 mRNA downstream 264048 40371897 ~ 40451115 (-) True XLOC_018314
TCONS_00036051 mRNA downstream 344427 40369257 ~ 40370736 (-) True XLOC_018313
TCONS_00036050 mRNA downstream 347670 40337423 ~ 40367493 (-) True XLOC_018312
TCONS_00036060 mRNA upstream 3686 40724207 ~ 40725142 (-) False XLOC_018317
TCONS_00036061 mRNA upstream 3761 40724282 ~ 40729364 (-) True XLOC_018317
TCONS_00036062 mRNA upstream 24233 40744754 ~ 40750953 (-) True XLOC_018318
TCONS_00036063 mRNA upstream 32997 40753518 ~ 40755614 (-) False XLOC_018319
TCONS_00036064 mRNA upstream 33384 40753905 ~ 40754794 (-) True XLOC_018319
TCONS_00036008 other downstream 1682227 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 1809550 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 2192514 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 2780848 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 5169969 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 41791 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 41811 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 41830 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 507543 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 632325 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_02738375_02739517.mRNA True 2186 mRNA 0.47 1 CI01000029 2738054 ~ 2740239 (-)
tiger barb (Puntius tetrazona) TU35969 True 843 TUCP 0.49 5 NC_056701.1 28515643 ~ 28560324 (+)
mexican tetra (Astyanax mexicanus) TU35969 True 2828 lncRNA 0.41 2 NC_035899.1 47089537 ~ 47094913 (+)