RNA id: TCONS_00036944


Basic Information

Item Value
RNA id TCONS_00036944
length 744
lncRNA type read_through
GC content 0.40
exon number 4
gene id XLOC_018309
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40215369 ~ 40254485 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTACTGAGTTACTATGCTGCCATACTCGTAGTATGCATGCTAGTTACCCAGAATCCATGACCACGTTATTGTGTGGCTTGGTGATGGTGAGAATAAGTTAGCTAAGAGAGCTAATGTGTGTGACAAAAGTTTGATTATCCTGTTGTAGGTGATATTCCTTGGTGTGTTTGATGCCTGGATTCCTGTCATGCAAGAAATCTACAGAAGTAGAGGAGCAATGCAGAATTCAGCTAAAGGTTTCTCAGCTGCTGCTTCTTTCACCTCCTCGGCTGTGGCTGTTTTAAGAaagataacaaacaaaacaaaagtttgtttgtGCTTTCGGTGGAGACTGTTCACAACCCCATGGGTCAAAATGGATCTCTTCAAGTCCCACATTTTCGCACTCTCTCTCCCTTACCAGCAGGCTTCTTTCTCTCAGCAGGGATTTATTTTGTTGTGTGAAACATATCTAATGATGTTCTTGATAGAGGAATGACAGAGTATCTGCTGCTTGCCTGCAGGCAGGGCAGAGATTCGTGTTTTTCTGGCCTGCGCTTTGCAATAAATGGAATGGGTTGATGTTATTGCTGTAATTTTCTGCAGAGCACAACATTTTAAAGAACTAAAGTACCAAGTAGTAAAGTCAAAACAAGCCAAATCTATTTGAGTTAACCTTGTCAATACAAATAAAAGATCAGTTAAACAAAACCTTGTGATATTTTTAATGTGAAATAGGTGGgattataaaaacgctgtaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036942 lncRNA downstream 196151 39893074 ~ 40019218 (-) False XLOC_018307
TCONS_00036047 lncRNA downstream 295195 39919232 ~ 39920174 (-) True XLOC_018308
TCONS_00036941 lncRNA downstream 383250 39819027 ~ 39832119 (-) False XLOC_018307
TCONS_00036940 lncRNA downstream 468932 39744195 ~ 39746437 (-) True XLOC_018305
TCONS_00036038 lncRNA downstream 529242 39677521 ~ 39686127 (-) True XLOC_018303
TCONS_00036491 lncRNA upstream 75621 40330106 ~ 40336899 (-) True XLOC_018311
TCONS_00036055 lncRNA upstream 225444 40479929 ~ 40484965 (-) True XLOC_018315
TCONS_00036066 lncRNA upstream 502913 40757398 ~ 40758384 (-) True XLOC_018320
TCONS_00036945 lncRNA upstream 983219 41237704 ~ 41242669 (-) True XLOC_018323
TCONS_00036074 lncRNA upstream 1656085 41910570 ~ 41926435 (-) False XLOC_018325
TCONS_00036045 mRNA downstream 95497 39806370 ~ 40119872 (-) False XLOC_018307
TCONS_00036046 mRNA downstream 96279 39893074 ~ 40119090 (-) True XLOC_018307
TCONS_00036044 mRNA downstream 425523 39755479 ~ 39789846 (-) True XLOC_018306
TCONS_00036043 mRNA downstream 426330 39752383 ~ 39789039 (-) False XLOC_018306
TCONS_00036042 mRNA downstream 426333 39749448 ~ 39789036 (-) False XLOC_018306
TCONS_00036048 mRNA upstream 15406 40269891 ~ 40319890 (-) True XLOC_018310
TCONS_00036049 mRNA upstream 82938 40337423 ~ 40360571 (-) False XLOC_018312
TCONS_00036050 mRNA upstream 82938 40337423 ~ 40367493 (-) True XLOC_018312
TCONS_00036051 mRNA upstream 114772 40369257 ~ 40370736 (-) True XLOC_018313
TCONS_00036052 mRNA upstream 117412 40371897 ~ 40451115 (-) True XLOC_018314
TCONS_00036008 other downstream 1182433 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 1309756 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 1692720 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 2281054 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 4670175 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 507827 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 507847 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 507866 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 973579 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1098361 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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