RNA id: TCONS_00036044


Basic Information

Item Value
RNA id TCONS_00036044
length 2505
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_018306
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39749448 ~ 39789846 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCACAGAAAAATAATGTCATTATTTAACCTaacaaatacaatgaaaaaatgaaatagaAAATAATGTGATAATGCTAAGTTTTATTCTAGATATAAGCTTTGAAGGatagttacataaaaatatacagttaagTGGTATTTTggtactatccatccatccatctgtattaTCTGTATCTATTTATTGACATGTAAACTATTATTGTATGACATTTAAGCGTCTGTTTTCTGTGGTTTTCCCCAGGTAGCAATGTTATATATACAGGACTCATTCTGATGTATGCTTTGATTGTTGTTTTGAGACTAGAACATATTTCAAACGGTACAAGCTTACAGTATTAATCACtcgtacattttaatataaagagTATGACTTCAGTCACAtgcagttgtttaaaatgtaaaacgtCAGTTTTTTATCTTTACGTATGTATTTATTGCATATTGTAGATCTAACCAAACACCTTATAACTAGCTATTTGTGCTATAATTTATATGCGCATTTAATAGGTTATTAACAGTAATAGTTCTCACCTAGTCGAGCATAAACGAAAGAAGCATAACATTCGACGGTGAGCTCACGAATCCTACTATGCTGACGACGGATTTTCATTAATATTAGGAAATGTTTCATTGGAAGCAAAAGACACAACGTCAAAGCCGCATAGTTAATATTCATGAGATAGACGTGTGTCATTGGATCGTTACCAAGTAACGTCAACGTAAGATAGTTAATATTCATAACCCGAGGCTTCGCCGTAGTAGGATTCGCTATTTAGCACCCGGAAGTGGTGTATTAGTTGTTACTCGGTGTTTTTAGTTTGTGAGTTTGAAACcggactgtgtgtgtttttcgCTCAAATGGAAAGTTGACCGCTCAGGAATGGAAGATGAGTCTTCCGTGCGAGTGAATGACACCACGCGAAATATGCCCGGTTATTCCGGACGCGACGGGGAATCTGTCTATGTATCCAGCGGGACACGGAGCACTGATTTCGGCCAGGATGTCCGCAGCGGTGAGGCGAAGGTGCCGTCATCGTCATCATTATCCTCGAAGGATGTTTTGGAATTTCATAAACACAAACATGGACCAGGAGGCGGCCACAGAGAACATATCGAGAGGGAAAACATAAGAGCTGTGGATATTTTAAGAAGGAATTTTGGTTCCACTATCAGAGATACAGAAGATCCCAAAAATCTAGAGAAAGTAGGAAATGACATCAATCTAAACGACTTGGACCATGAAAATGATGATGAAAGGTTGCAATGTAGCACAATAAATCTACAACAAGATATTGAGAGCAATCCAGAATTGGGAAATCCTGATGGGAATCATCATATTGATTATAACATTGATTTGAAGAGTGGCGAAGATCCCAGCCAATCAAAAGAGCATGTTTACTGCACTGTATACTGTATAGCCAATGATAATTATAGGATACCTGTTCAGAAAACAACATCCAATCACGagacttcatcatcatcatcatcatcatcttcttcatcttcttcttccCCAGATGTACTGGTTTTACCATCCACCGACTTACCAAACTTAGAATTGGACAATCATGATCCCTACCCAGTGCCCTATACCGTCTCTGACCTGATGGTGTCTGGAATACACAGCTCATATAATGCTGACAACAGTTTGTCTGTGGTGTTGACATGTCGCATTTGTCTTGACGATAAACAAATCATGCCGCTACACTGTTGCAAAAAGGCTGTTTGTGAAGAATGTCTGAAAAGATACATCATCTCACAGGTTCACGTGGGTCGAGCGCACTTGGTGTGTCCCATCACAGAGTGCAGCGGTTTCTTGGAGGAGAACTTGGTGATTTCACACCTGACCAGTGAGGAACTTGCAAAATACAAGTACTTTTTGGAACTGAGCCAATTGGACTCCAGCACAAAACCGTGTCCTCAGTGCAGCCTGTTTACATCCTTGAGGGGTCGCAGCCAACAGTCGTCCACCAAGAGTGAACATAAGTATAAGATTCAGTGCACCAAGTGCCAGTTTGTCTGGTGTTTTAAATGCCACTCGCCCTGGCATGAAGGCCTGAAGTGTCGGGACTACAGGAAAGGAGACAAACTGTTGCGCCACTGGGCCAGTGTCATCGAACGTGGCCAgaggaacgctcagaaatgcccACGCTGCAAGATCCACATTCAGAGAACGGAGGGCTGTGATCACATGACATGCACACAATGCAGCACTAACTTTTGTTACCGTTGTGGGGAGAAGTACAGACATCTGCGCTTCTTCGGGGACCACACTTCCAACCTGAGTGTGTTTGGATGCAAATACCGCTACCTGCCAGAGAAACCGCACCTACGACGGCTGGTCCGAGGCTCCGTCTGCAtgAGTAAAATGCTGGTGGCTCCCGTGGTCATTGTCCTGGTGGTGGTTGTCGGAGCTCTGGCTTTGGTCGTAGGTAAGGATTCTGTAACACTTATAAATCTCACAAATGATCAGATgacaattgttaaaaaaaattcttaa

Function

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060503-400 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF217 (ring finger protein 217).

Ensembl:

ensembl_id ENSDART00000188418

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036940 lncRNA downstream 9042 39744195 ~ 39746437 (-) True XLOC_018305
TCONS_00036038 lncRNA downstream 69352 39677521 ~ 39686127 (-) True XLOC_018303
TCONS_00036036 lncRNA downstream 69410 39601856 ~ 39686069 (-) False XLOC_018303
TCONS_00036035 lncRNA downstream 69445 39601856 ~ 39686034 (-) False XLOC_018303
TCONS_00036941 lncRNA upstream 29181 39819027 ~ 39832119 (-) False XLOC_018307
TCONS_00036942 lncRNA upstream 103228 39893074 ~ 40019218 (-) False XLOC_018307
TCONS_00036047 lncRNA upstream 129386 39919232 ~ 39920174 (-) True XLOC_018308
TCONS_00036943 lncRNA upstream 425523 40215369 ~ 40254480 (-) False XLOC_018309
TCONS_00036944 lncRNA upstream 425523 40215369 ~ 40254485 (-) True XLOC_018309
TCONS_00036039 mRNA downstream 19492 39691793 ~ 39735987 (-) False XLOC_018304
TCONS_00036041 mRNA downstream 19518 39713111 ~ 39735961 (-) True XLOC_018304
TCONS_00036040 mRNA downstream 19527 39700010 ~ 39735952 (-) False XLOC_018304
TCONS_00036034 mRNA downstream 159141 39588897 ~ 39596338 (-) True XLOC_018302
TCONS_00036033 mRNA downstream 173163 39576311 ~ 39582316 (-) True XLOC_018301
TCONS_00036045 mRNA upstream 16524 39806370 ~ 40119872 (-) False XLOC_018307
TCONS_00036046 mRNA upstream 103228 39893074 ~ 40119090 (-) True XLOC_018307
TCONS_00036048 mRNA upstream 480045 40269891 ~ 40319890 (-) True XLOC_018310
TCONS_00036049 mRNA upstream 547577 40337423 ~ 40360571 (-) False XLOC_018312
TCONS_00036050 mRNA upstream 547577 40337423 ~ 40367493 (-) True XLOC_018312
TCONS_00036008 other downstream 722543 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 849866 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 1232830 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1821164 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 4210285 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 972466 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 972486 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 972505 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1438218 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1563000 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_02231187_02248416.mRNA True 2756 mRNA 0.43 6 CI01000029 2231187 ~ 2249491 (-)