RNA id: TCONS_00036491


Basic Information

Item Value
RNA id TCONS_00036491
length 372
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_018311
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40330106 ~ 40336899 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tagcatatttagcaaatcagcatattgttATTTGTAAAAGCTCGTATGACACTGAAGAATGAAGTAAATTCAACTATATCACAGGAATAATTTATTAACcatgaaaacaacacaaaacattcattttacaagtaaatattaatttacaatgctGCAGTTTTGACTGTATTTTTATCAAGCAAATATAGCCTTGGTGAGAAGAGATTTACATCCATATGTTACTGATATCAAGATCCTCCTGAAATCTAGATATACAAATGATCTGTTTAAACCGGACACATCAAAACAAAGCTTCTTTTTCTGTtcattttgtcgTGTTTGTCAGCAGCACCAAGCATGTTTGTTTAAAtgataatgttgtttttatgACTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036944 lncRNA downstream 75621 40215369 ~ 40254485 (-) True XLOC_018309
TCONS_00036943 lncRNA downstream 75626 40215369 ~ 40254480 (-) False XLOC_018309
TCONS_00036942 lncRNA downstream 310888 39893074 ~ 40019218 (-) False XLOC_018307
TCONS_00036047 lncRNA downstream 409932 39919232 ~ 39920174 (-) True XLOC_018308
TCONS_00036941 lncRNA downstream 497987 39819027 ~ 39832119 (-) False XLOC_018307
TCONS_00036055 lncRNA upstream 143030 40479929 ~ 40484965 (-) True XLOC_018315
TCONS_00036066 lncRNA upstream 420499 40757398 ~ 40758384 (-) True XLOC_018320
TCONS_00036945 lncRNA upstream 900805 41237704 ~ 41242669 (-) True XLOC_018323
TCONS_00036074 lncRNA upstream 1573671 41910570 ~ 41926435 (-) False XLOC_018325
TCONS_00036073 lncRNA upstream 1573671 41910570 ~ 41926474 (-) False XLOC_018325
TCONS_00036048 mRNA downstream 10216 40269891 ~ 40319890 (-) True XLOC_018310
TCONS_00036045 mRNA downstream 210234 39806370 ~ 40119872 (-) False XLOC_018307
TCONS_00036046 mRNA downstream 211016 39893074 ~ 40119090 (-) True XLOC_018307
TCONS_00036044 mRNA downstream 540260 39755479 ~ 39789846 (-) True XLOC_018306
TCONS_00036043 mRNA downstream 541067 39752383 ~ 39789039 (-) False XLOC_018306
TCONS_00036049 mRNA upstream 524 40337423 ~ 40360571 (-) False XLOC_018312
TCONS_00036050 mRNA upstream 524 40337423 ~ 40367493 (-) True XLOC_018312
TCONS_00036051 mRNA upstream 32358 40369257 ~ 40370736 (-) True XLOC_018313
TCONS_00036052 mRNA upstream 34998 40371897 ~ 40451115 (-) True XLOC_018314
TCONS_00036053 mRNA upstream 138677 40475576 ~ 40487208 (-) False XLOC_018315
TCONS_00036008 other downstream 1297170 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 1424493 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 1807457 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 2395791 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 4784912 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 425413 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 425433 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 425452 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 891165 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1015947 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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