RNA id: TCONS_00036054


Basic Information

Item Value
RNA id TCONS_00036054
length 1982
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_018315
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40475576 ~ 40487284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGGATGACAATACACGTGAGGAACCTTACCGTTTCATTTTCATACCAGCAAAATGAAACACAGCTCGAACGTCCCCGCATTTCTTACCAAGCTTTGGACCCTCGTCGAGGATTCGGATACGAATGAATTCATTTGCTGGAGtcagGAAGGGAATAGTTTCCTTGTACTTGATGAGCAAAGGTTTGCAAAAGAGATTCTCCCAAAGTTTTTCAAGCACAACAACATGGCCAGTTTTGTACGACAGCTCAACATGTATGGATTTCGCAAGGTGATGCACATTGATTCGGGCATAGTTAAGCAAGAGCGAGATGGTCCTGTCGAATTTCAGCATCCATACTTTAAACATGGGCAAGATGACCTGCTGGAAAACATAAAAAGAAAGGTGTCTAATGCGCGGCCTGAAGAGAGTAAAATAAGGCAAGATGATCTTTCAAAAATTTTGACCAGCGTTCAAAGCGTCCATGAGCAGCAAGAAAATATGGACGCTAGACTTGCCACCCTGAAAAgAGAAAATGAAGCTCTTTGGACGGAGCTGTCAGACCTCAGAAAGGTACACGTACAGCAACAACAGGTCATAAAGGAGCTGGTGCAGTTCATCTTTACATTGGTTCAGAACAACCGTTTGTTAAATTTGAAACGCAAAAGGCCTCTTGCATTAAACATTAATGGAAAGAAGTCGAAATTCATTCACCAGCTCTTTGAGGAACCCATAGACCACAGCAAAACCACTGTTAATGGACTGAAGAACAATTCTGATATTTCTGATGATGTCATAATCTGTGACATCACAGACGAAGATCCAGAAGTTACAGATGGGATATCTGTACCTGATGAAGAGGATGCTGAAATCGTGGAAATCACTTATGAAAGCAGCCCAAAGACTGTACGACAAGACAGTGCAAATGGCACCATAGTAAATTCAACCGCTCACCAGGAAGCAGAACCCAAAACCACCCCTGACGTTTCAACGACCAATAGCGCCCTGCAATTGAACAAACCCTCATGTTTAAGTTTAGAGGATCCAATGAAGCTCATGGACTCAATTCTCAGTGAAAATGGAGCCATTTCACAAAACATCAACCTTCTGGGCAAAGTTGAGCTGATGGACTATCTGGATAGTATTGACTGCAGCCTGGAAGACTTCCAGGCCATGCTATATGGAAAACAGTTCAACATTGACCCAGATATCATAGAGGAAACAATCTCGGAAACCAAAAATAACAACAGCAAAGCCAACAAAGAGAATCTCGATTCAGAAAACACAGACAAGCAGCTGATTCAGTACACAACGTGCCCTCTGATGGCCTTCCTGGACGGCTGCACCCCTCTAACCCCATCCGATCCTCAGCCAGAAGATCCCCCAGACCTGCTGGATGAGTCCCTGGAGATGGAGACCCCGCGCAGCTCTCTGATCCGCCTGGAGCCCCTGACAGAAGCGGAGGCCAACGAAGCCACGCTCTTCTATCTGTGCGAACTAAACTCAGATCTCCCCAATGCAGACACACCACCGCTTGAtatctgaatttaaaaaaagagactgtCATttatcaagtgttttttttttgttttttgtttttaaaatgcatcaaAATGATGATATTTATTTGCCAGAATAACTTTGGTACCATCTGTCCATGAGTTTTTACATTCCTTCATTTCACACACAGTTCACTAGCTATTGTTCTTCTTTCCACCTTCAGGCTGCAGTTCTGTTGCTGGTTTACATTGCAGCAGTTTCGTGGAGCATGTGTGTTGTTCTTGTTTTATTATGGAGCGCTTCAGTAAACATCATAGCGCTCTTTATGTATGTGATCTAGAAGTGCCTGCCTGGTGTCCTAATGTCAGCACAAAAATGGACGTGAAGACTTTGGCTTACGGTTAGTTCCATACAGTCAGGCAACACACAGTGATTTTCTTGTTACCGTGAGCTTTTTATCATTATTCCAAGCATCGCAGTAGCATTAAATGAACTTCAATGTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-011128-1 Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in eye; hindbrain; and otic vesicle. Orthologous to human HSF2 (heat shock transcription factor 2).

Ensembl:

ensembl_id ENSDART00000142029

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036491 lncRNA downstream 138677 40330106 ~ 40336899 (-) True XLOC_018311
TCONS_00036944 lncRNA downstream 221091 40215369 ~ 40254485 (-) True XLOC_018309
TCONS_00036943 lncRNA downstream 221096 40215369 ~ 40254480 (-) False XLOC_018309
TCONS_00036942 lncRNA downstream 456358 39893074 ~ 40019218 (-) False XLOC_018307
TCONS_00036066 lncRNA upstream 270114 40757398 ~ 40758384 (-) True XLOC_018320
TCONS_00036945 lncRNA upstream 750420 41237704 ~ 41242669 (-) True XLOC_018323
TCONS_00036074 lncRNA upstream 1423286 41910570 ~ 41926435 (-) False XLOC_018325
TCONS_00036073 lncRNA upstream 1423286 41910570 ~ 41926474 (-) False XLOC_018325
TCONS_00036946 lncRNA upstream 1423286 41910570 ~ 42173191 (-) False XLOC_018325
TCONS_00036052 mRNA downstream 24461 40371897 ~ 40451115 (-) True XLOC_018314
TCONS_00036051 mRNA downstream 104840 40369257 ~ 40370736 (-) True XLOC_018313
TCONS_00036050 mRNA downstream 108083 40337423 ~ 40367493 (-) True XLOC_018312
TCONS_00036049 mRNA downstream 115005 40337423 ~ 40360571 (-) False XLOC_018312
TCONS_00036048 mRNA downstream 155686 40269891 ~ 40319890 (-) True XLOC_018310
TCONS_00036056 mRNA upstream 227879 40715163 ~ 40720521 (-) False XLOC_018316
TCONS_00036057 mRNA upstream 227879 40715163 ~ 40720530 (-) False XLOC_018316
TCONS_00036058 mRNA upstream 229471 40716755 ~ 40717900 (-) False XLOC_018316
TCONS_00036059 mRNA upstream 229603 40716887 ~ 40720458 (-) True XLOC_018316
TCONS_00036060 mRNA upstream 236923 40724207 ~ 40725142 (-) False XLOC_018317
TCONS_00036008 other downstream 1442640 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 1569963 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 1952927 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 2541261 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 4930382 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 275028 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 275048 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 275067 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 740780 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 865562 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_02593889_02603627.mRNA True 1746 mRNA 0.43 10 CI01000029 2593391 ~ 2603627 (-)