RNA id: TCONS_00036946


Basic Information

Item Value
RNA id TCONS_00036946
length 1871
lncRNA type read_through
GC content 0.31
exon number 2
gene id XLOC_018325
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 41910570 ~ 42173191 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTGTTTTACAGTATATAGATCAGCTCAAACATTTCtgaagtttttaaataaaataaattacaacgaatgattaaaaaaaaaaatcattcgtTCACTGAATGTTTCCAATTAAGGAGAAAAATTAGGAGGACAAAAGGATTTTTATTGGCTAATATATCAGCCTCTAAATCTAAAAAGTTACTGGTTATCCATCTCAGTTAAAAATATCGGTTTGCATTCGTAGCGAGATCCGAGATCCGTTTGTTTCAAGAAACTCGCACTTTATCTACatcttaaaccattttaaaagttGCAGTAAATGACTTcagacttttattatttttttctgacttCACTTATAGACCTGACAAACTTCCGCAAACTGATTAGCAGAAAAAgaatgattctgattggctagttTTCGAAACCGGGCCCTAAGCAGTCGTAAGCAGTGCTGGTTCtgaagcctggtttctctcaagttttttttttttcttcactttcatcaaaaaaaaaaaaaaaaaattgttaaagtgTTATCAGTCAAGAACCAAGCAAACCAATCACAACATGACAAAGcatgatttaaagcaaaataactgcatcaaaattagacaaaaaacaacaacaacaacaaagcctAACAActtttaacaagaaaaaaaaaaaatcctacgaAGCACTGCGACTAAAAATTTTAATTGTGTAGAGCTGCACTgggagtgggtggagctaaacatCTCTTATTGCTGGCTTTACTGCGAATCTCTGATTGGTGAATTCCATGCTAAGCatcatgggaaatgtagtttttttcaGTATGTGTTAGACTTTCATTTACTTAATGCAAACAGATCAAATTAACAAAAACCGATATGTCTAATTAACATTATAGAGACTCACAACAACTTTGTCTTAAAAGGATTATGAGTTATTGATGATaatttgaaattttaaaaataaagctcaGCTGTcactaagacattttaagacaaaTTTTACTCATTTTGGCAGTAGGAATTTATGAGACTAACGTAATGtacaaatttattaattatttactaaaaatGGATCCTGCTCTAAAGCCAAAAGTAAGatgatattaatgataaaataaacaaaacaaatagagACGCTTTTTTAAAGTAGCAGAAGTGAACATCAGTACTTTCATTGTCATTTAGTTCCCTCTAGTGGTTGTTGCCTCTTTTTGCCTAATAAAATAACAactaggataaaaaaaaaactgatttaggTGAACTACAGGTTTGGAAATAGTTtgatgaattaaaaaagaaaatatatgcaAGCTCTCAGATCACATCACTCTTCTGATACTATATTACTATTGTGTGTATTATTCCTGCTATTTAAACGGTGtgatatgaaatattttaaaaaatcatgatGAAAAAACACAATGGTTTGCAAATACTATAATCCAAGttgtaatatttacatattatttatgcAATCACAATCACTGTGTTCTTGTTTTGTATCTGTGTGAATGTATTTATGACGTAACGATACGAGAAGGAATTATTAAGTGCTTGATATACAAGACAACATTAAAGCAAGCGCTGCAAATAAAACCCTTCCACTGATAATCAACCATTTGTGTGCTTCTTGTGATTAATAAATCCCGAATAAAactgaataatacatttaaagtctTCAGTAGGGAAAATTAAAAACGTTTGAATATTCAGTCCTGCAGAGTCAAAAGAACAAACACTGGCTCTTCACTACTAAAAATAGACCCCTGACACAGGAGACTATAATCAGCATCTAATCAAAATTGACCTCATTTATTTTTCTAATGCTCATCGTCCTGGTCATACTGTGCATGATTCAGCGGAGCACATTGTTTTCCAATCTCTTCACTCA

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036945 lncRNA downstream 667901 41237704 ~ 41242669 (-) True XLOC_018323
TCONS_00036066 lncRNA downstream 1152186 40757398 ~ 40758384 (-) True XLOC_018320
TCONS_00036055 lncRNA downstream 1425605 40479929 ~ 40484965 (-) True XLOC_018315
TCONS_00036491 lncRNA downstream 1573671 40330106 ~ 40336899 (-) True XLOC_018311
TCONS_00036944 lncRNA downstream 1656085 40215369 ~ 40254485 (-) True XLOC_018309
TCONS_00036948 lncRNA upstream 47543 42220734 ~ 42223003 (-) False XLOC_018328
TCONS_00036949 lncRNA upstream 126497 42299688 ~ 42323023 (-) False XLOC_018329
TCONS_00036950 lncRNA upstream 167955 42341146 ~ 42367957 (-) False XLOC_018329
TCONS_00036493 lncRNA upstream 258369 42431560 ~ 42439762 (-) True XLOC_018331
TCONS_00036494 lncRNA upstream 584384 42757575 ~ 42760664 (-) True XLOC_018335
TCONS_00036067 mRNA downstream 1144183 40761717 ~ 40766387 (-) False XLOC_018321
TCONS_00036065 mRNA downstream 1150353 40757141 ~ 40760217 (-) False XLOC_018320
TCONS_00036063 mRNA downstream 1154956 40753518 ~ 40755614 (-) False XLOC_018319
TCONS_00036064 mRNA downstream 1155776 40753905 ~ 40754794 (-) True XLOC_018319
TCONS_00036062 mRNA downstream 1159617 40744754 ~ 40750953 (-) True XLOC_018318
TCONS_00036082 mRNA upstream 47967 42221158 ~ 42241456 (-) False XLOC_018328
TCONS_00036083 mRNA upstream 58753 42231944 ~ 42241150 (-) True XLOC_018328
TCONS_00036084 mRNA upstream 123065 42296256 ~ 42378994 (-) False XLOC_018329
TCONS_00036085 mRNA upstream 180078 42353269 ~ 42378865 (-) True XLOC_018329
TCONS_00036087 mRNA upstream 258351 42431542 ~ 42439896 (-) False XLOC_018331
TCONS_00036072 other downstream 557610 41352846 ~ 41352960 (-) True XLOC_018324
TCONS_00036071 other downstream 682391 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036070 other downstream 1143952 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036068 other downstream 1144219 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036086 other upstream 231907 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036093 other upstream 794083 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036096 other upstream 843246 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036099 other upstream 909758 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036136 other upstream 2175751 44348942 ~ 44349057 (-) True XLOC_018363

Expression Profile

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