RNA id: TCONS_00036062


Basic Information

Item Value
RNA id TCONS_00036062
length 2480
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_018318
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40744754 ~ 40750953 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCATTGAGCAACGTAGTCAATCAGCAGCGGATTCAGACGCAGTTGTCACAGATTTGAACACTGCACCTTGAACGCTCTTATCTTTTGAACATCGGATTTTTGTCACAGTCCACACAGTTTTGCAGGTAGACAAGGCACTTCAGGCTCAAGCATGGGAGAATGGGGATTTCTCTCCAAGCTGCTGGACAAAGTGCAGTCTCACTCCACAGTGGTTGGGAAGGTGTGGCTCACGGTCCTGTTTGTCTTCAGGATCATGGTTCTCGGGGCTGGTGCTGAAAAGGTGTGGAGCGACGAACAATCAAAAATGATCTGCAACACGAAACAGCCTGGTTGCACGAACGTATGCTACGATCACACCTTTCCCATCTCCCATATTCGCTTCTGGGTTCTTCAAATCATCTTCGTGTCCACGCCAACACTTCTATACTTCGGCCACGTCCTGCATGTCCTCCACAAAGAAAAGAAACTGCGACACGAGATCGAATCCCATGCTGAAAAACAAGGCCTCAAACAGCCGAAATATATAGACGATTACGGCAAAGTCATAATCAAGGGCCAATTATTGGGTAGTTACCTAGCCAGCCTGTTTGTGAAGATCTTGCTAGAGGCCGCGTTTATCGTTGGCCAGTATTATATTTACGGTTTCATAATGATCCCGAAGATCGAATGCTCCCAGTCTCCTTGCCCTCATACAGTTGAGTGCTACATGTCCCGTCCCACAGAGAagaccatcttcatcatcttcatgcTGGTGGTGGCGTGCATCTCTCTGCTTCTGAACGTGGTTGAGATGTTCTACCTGATATGCCGCAGGTCAAAGAGACACCGCGCCGCAAAGATGACTTCATTTCATAAAGGTTTAAACGGATCCAAGGTGTACATTTCAGGAACTTCAAAGTCTAGCAAATCTTAagggtttaaaatattattatgctTGATGTTTAGAGCTTGGCCGTGGCTAAATGAGACTAAGATCTGGGAATTCAAATTTGTTTTGcagagtttttgttttgcttttaaatgatgCCCAGCTAACAGCTAGCATTTTaaagttcatttattttcctttagcttagtctctttatttatcaggagttgccacagtggaatgaagcaccaacttatccagcacatgttttacacagcccttccagctgcaacccagtactgagaaacatccatacactcattcacacacatgcactatggcctatttcattcattcattcattttcttttcggcttagttcctttattcatcaggggtcgccacagcggaatgaaccaccaacttattcagcatatgttttacacagcggatgccctttcagctgcatcccagtactggcaaacatctattaactcattcacacacatacactatgccaatttagtttattcgattcaTTTATAcagcgtgtctttggactgtgggggaaaccagagcacccaggggaaaccattccaacacagggagaacatgcaaactccacataaaaatgtcaaatggcccagccgggactcgagccagcaaccttcttgctgtgaggcggcagtgctaaccactgagccactgtgtcacccaatTCTAACGTTACACTATTAAAATAAACGTTCCTTATTGGCATTGACGGTTCCATGATGAAAAAGACTCTTTATAGAAAAACATTTTCTTTGGAGAACCAAAATATGTtctccatcactgggaaaacaatAGTTCCTCCTGGCACCTTTGTCTGTAAAAGTGTATAAATGTTTGTCTTCCACACGGTAAAAACaagttgattcaacttaaaatttataaggacatttttgagtttactcaacttacaTTGAGTCAAGTGCAGTAACTGGGTTGAAAGTtaagtaaactcaaaaatgtcatgaggttttttgctttaaaaatttaagaagtcaacttcttttttttttttttacagttaagtaaaattaataaaacatttatccggtgtctttaaaatgttctcaaaacataaaaacatcatactttttttgtaaaacatattttgatCTTAAACATTCAGGAACAATAATATTTCATAACTTGAGAATGCTAGTTCAGTTGGCTGGGATATTTTAAACAACGTTTGCACCAAAACTATTGTTTTATAGGATATTTCTGGTAATTTATTTTGTATGAACTATTTTTAACTTCTGACTTGTCATATATCCTGCCATTTATCTCATCTGATAACATGTGATAATAGTTCATTATGTAACAgtgttaatgcttttatttttctctttcaaTTTGGTTAAAGCTAACCTGATGGAGGAAAGCAATGATAGCTAATGAAGGCCTTGCTTTTTAGGTCAAGCTAATTTCTGCATTCATATGTATATTATGCTGTTAATCCTAAATTGTTTACTTTCTTAAATGTATATACAATGCATTTGTAAATATGTGTAATTATGTTTTAGCTTTCTTAAAACATAATAAAGTATTCCTCAGGTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000061256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036055 lncRNA downstream 259789 40479929 ~ 40484965 (-) True XLOC_018315
TCONS_00036491 lncRNA downstream 407855 40330106 ~ 40336899 (-) True XLOC_018311
TCONS_00036944 lncRNA downstream 490269 40215369 ~ 40254485 (-) True XLOC_018309
TCONS_00036943 lncRNA downstream 490274 40215369 ~ 40254480 (-) False XLOC_018309
TCONS_00036047 lncRNA downstream 824580 39919232 ~ 39920174 (-) True XLOC_018308
TCONS_00036066 lncRNA upstream 6445 40757398 ~ 40758384 (-) True XLOC_018320
TCONS_00036945 lncRNA upstream 486751 41237704 ~ 41242669 (-) True XLOC_018323
TCONS_00036074 lncRNA upstream 1159617 41910570 ~ 41926435 (-) False XLOC_018325
TCONS_00036073 lncRNA upstream 1159617 41910570 ~ 41926474 (-) False XLOC_018325
TCONS_00036946 lncRNA upstream 1159617 41910570 ~ 42173191 (-) False XLOC_018325
TCONS_00036061 mRNA downstream 15390 40724282 ~ 40729364 (-) True XLOC_018317
TCONS_00036060 mRNA downstream 19612 40724207 ~ 40725142 (-) False XLOC_018317
TCONS_00036057 mRNA downstream 24224 40715163 ~ 40720530 (-) False XLOC_018316
TCONS_00036056 mRNA downstream 24233 40715163 ~ 40720521 (-) False XLOC_018316
TCONS_00036059 mRNA downstream 24296 40716887 ~ 40720458 (-) True XLOC_018316
TCONS_00036063 mRNA upstream 2565 40753518 ~ 40755614 (-) False XLOC_018319
TCONS_00036064 mRNA upstream 2952 40753905 ~ 40754794 (-) True XLOC_018319
TCONS_00036065 mRNA upstream 6188 40757141 ~ 40760217 (-) False XLOC_018320
TCONS_00036067 mRNA upstream 10764 40761717 ~ 40766387 (-) False XLOC_018321
TCONS_00036076 mRNA upstream 1216359 41967312 ~ 41992878 (-) True XLOC_018326
TCONS_00036008 other downstream 1711818 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 1839141 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 2222105 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 2810439 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 5199560 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 11359 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 11379 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 11398 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 477111 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 601893 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_02753815_02761288.mRNA True 1125 mRNA 0.43 2 CI01000029 2753748 ~ 2761527 (-)