AMCG00004324


Basic Information

Item Value
gene id AMCG00004324
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42914142 ~ 42920194 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004324
ATGCAAAATGAAACCCAAGACGACCATGCCAGTCCTGTCACGAAGAAGCTCAGTAAGATGTCGAAATACACAAAGGCCAAGGGGAAAGTGAGAATACGAGGAAGTTTGCTGTGTAGTTATCTGCTAAACGTCATTGCTAAAATTATGTTGGAAGTTGCTTTCATTGTCGGGCAGTATTATCTGTATGGCTTCATGCTGGAACCTCAGTTTGTGTGTGACAGGTTTCCCTGCCCCCACAGAGTAGACTGTTACATGTCACGCCCCACTGAGAAGACCATCTTCATTCTGTTCATGCTCGTGGTGGCATGTGTGTCTTTGGTGTTAAATGTCACTGAGATCTTCTACCTGTGCTTTAAATCAGTTCACAACCTCATGCAGAAAAAGCAGAAGAACTTCACGGCGACCCCTACAGCTCCGCCGAAAGATGACGGCCATCTCAAAAATAAGGAGCACATGTTCCAGAACTGGGTGAACCTGGAAACAGAGCTTCAGGGGAAGACGCTTGAGTTCATGAAAAGTGCTGatagagaggaggaggaagggaaggAACAAGGCCCCCCTGCCCACCCTCAAGGCAGTGCCTATTAAAGAGCGGTTAAGGAATGGGGGACTGGTCATTTCTGGGCAGGCTGCTGGATAAGGTGCAGTCCCACTCCACAGTGGTTGGGAAGGTCTGGCTGACTGTCCTGTTTGTCTTCAGGATTTTAGTGCTGGGGGCGGGAGCAGAAAAGGTGTGGGGTGACGAGCAATCAGGTTTCATCTGCAACACACAGCAGCCTGGTTGCGAGAACGTCTGTTATGACCTGGCTTTCCCGATCTCCCACATTCGCTTCTGGGTCCTTCAGATCATCTTTGTTTCTGCCCCGACTCTGGTCTACCTTGGACACGTCTTGCATATAATCCACAAGGAGGAGAAAATGAGGCTGAGAATTCAACAAGTAGACCAAGGTGAACAACATAATTATATGCTGGTGAAAGCTAACAAGGTGCCGAAATACACAGATACAAAGGGTAAAATCAGAATTGAGGGGCATttattatgtagttatttaCTCAAcgtgatttttaaaatactctttGAGGTGGCTTTTATCGTGGGTCAGTATTATCTGTACGGTTTCGTGCTGGAACCCATGTTTGTGTGCAGCAGAAGGCCCTGTCCTTTCACTGTGGAATGCTACATATCCCGCCCCACGGAAAAGAGCATCTTCATTCTGTTCATGCTGACGGTGGCCTGTGTATCCCTCGTTCTAAACATAGTCGAAATTTTCTATCTCTTTGCTAGAAAGATTAAACGTGCCGCCAACAAGCAGTATAAGCGCCAAATCGATTACTTAAAAGTTCCCAAGACATCCGAGGGGACCAATCCTGGTTGGAAGCCAGCTGTGCAGCCTGATGGTTTCAGTAATAAGGATGATGAGCTGCAGAACAAAATTAACGAATGGAAGATGGGGAGTGAGGTGGCGAAAAGTGTAGGTGTAGAGGTGTATGGCCTAAAGGGGGACACTGAGAAGCAAAGTGAAATTCAAAGTGGTAAACACAGTGTTGGGGGAAGCTTGGAGAGCATTAAAGAGGAGAAACAATTTACTAGTTGAAAGTTAAATCCTTCACAGTGCTTCATACCACgtgttaaataaagtaaaatgaacaCATCATATAACAAGagtgcaaagaaaatataagaTGTAAGACTTAAAAGGCAAACTCTTAATTTCCAAATTCCCTTGTATCCCTCAACCTGAGGAGATTGTGGTTCaacttgtaatttattaattttgatttaaacaatgttaaattTGTTGCAgactttgttatttttatgggTCCTAAAAATAACAGTAGTTTTAGgaagttaacaaaaaaaaaaggtatccTTTACTTCAGAATGTCATAagggttgttttgtttcctatacaaaaaacaaacaataataattcataatgaattcataaataaaaacataaatgtgagaacaatattttggtttggaaattaattattaaaaatcataataatattttttactactaggtagtagtagtaatatgatgcaaatgataatgattattatcTTGTTTAATACCTTACAAAACTGTAAATGGATGTTTTTTGGACCATGTTTCAGTGCAGGAACTGAAaatcaggatttatttatttattaataacagtATATGTATGACATgcaattaatgtgtttttagccattacttttttttgctttgcctaattacattttacttttgattatattgaattacaaaaagattaaacaagATGTTCTTGCTTGATTTACAAAgacaatatgtatattatattttacagtccTTGTGTTATGTTACTTCAGATAATTAACGtatgaatgtattcataaatcAGTAATTAAACTATCGGAAGATACATTGTCTACATGTGACAATACATGTTGTGTGATATATTattggatatgtattttttgatggtagtatgcaggttaatatgaGTGGTAGTTTGTAATTTAACTAGTAGTAGTTTCATATAAATTAGGATTAGTATGCATCTGTAATAGTATGTCAAATTAAGTAGGTTAGTAGATAGCAAGAATGTTAATGTTTATGATAGTATGAATGTTAGTATGagtatatgtaagtattattattattattattattattattattattattattattattattaaatatgatataaCTGATAGGACAATGGAAATAGCCCCCTGGAGTGATGAAGCTATTTTTACATCATAATCCCTTTCTATTATGCAAATTACTGTCCGATAAGGAAAATATAGGGAAGATGTGGTATAGGATGGCTAAAAGGTGTGATGAGTGTACTAGAAATGTCATCAGTGAACAAAAAGTGTCATACATGACCAAAAAGTGTTGTGTGGGAGTAAAAAAATATGCCATAGTAGACCCTTACCCTTTCCCCACGAATGCCCTCCTGTCCCTATGAATTTGTAACCttctaatatataaatacatgcttaac

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004324 True 2988 mRNA 0.38 2 42914142 42920194

Neighbor

gene id symbol gene type direction distance location
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding downstream 12259 42901035 ~ 42901883 (-)
AMCG00004319 hsf2 coding downstream 161325 42738503 ~ 42752817 (-)
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding downstream 223063 42689048 ~ 42691079 (-)
AMCG00004317 NA coding downstream 226577 42679324 ~ 42687565 (-)
AMCG00004316 clvs2,LOC107675233,LOC107675107 coding downstream 253535 42640409 ~ 42660607 (-)
AMCG00004322 NA coding upstream 2482 42922676 ~ 42925799 (-)
AMCG00004325 NA coding upstream 55558 42975752 ~ 43035278 (-)
AMCG00004333 NA coding upstream 546975 43467169 ~ 43485249 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding upstream 565075 43485269 ~ 43514436 (-)
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding upstream 599785 43519979 ~ 43539410 (-)
G7336 NA non-coding downstream 176292 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 194451 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 601024 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 649165 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 693958 42219958 ~ 42220184 (-)
G7419 NA non-coding upstream 315624 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 948269 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1162903 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 1257452 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 1416077 44336271 ~ 44336570 (-)
AMCG00004313 NA other downstream 383136 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 846478 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3065019 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5532189 37324010 ~ 37381953 (-)
AMCG00004336 NA other upstream 482759 43402953 ~ 43450255 (-)
G7608 NA other upstream 1600720 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1619969 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1702996 44623190 ~ 44712051 (-)
G7868 NA other upstream 3386732 46306926 ~ 46307319 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_02753815_02761288 CX28.9 coding CI01000029 null 2753748 ~ 2761527 (-)