AMCG00004323 (LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086)


Basic Information

Item Value
gene id AMCG00004323
gene name LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42901035 ~ 42901883 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004323
ATGCGGAAAGAGGAGAAACTCAATAAGAAAGAGGAGGAGCTGAAAGCAGTCCAGAATGATGGTGGCGACGTGGACATGCCACTGAAGCAGATTGAAATGAAGAAGTTCAAGCATGGCCTGCTGGAGCACGGCAAGGTGAAGATGAAGGGGGCCTTGCTGCGCACTTATATTGTCAGCATCCTCTTCAAGTCGATGTTTGAGGTGGGTTTCCTGCTGATACAGTGGTACTTGTATGGGTTCACCTTGGCGGCAGTGTACACCTGCATTCGGGAGCCATGCCCACACAAGGTGGACTGCTTCCTCTCCCGTCCCACGGAGAAGACCGTCTTCATCATCTTCATGTTGGTGGTGTCTCTGGTTTCGCTGCTGCTGAATGTGATCGAGTTGTTCTACGTCTTCTTCAAAAGCATCAAGGATCGTGTGAAGGCCAAGAGAGATCCTTTCACTGGTAGTGCTCCTTTGAGCCCGACCCCCAAGGACTGCGCCTCCCCAAAGTACGCCTACTATAATGGGTGCTCTTCTCCCACTGCCCCCCTGTCACCCATGTCACCTCCAGGTTATAAGCTTGCTACTGGGGACAGGACCAACTCGTGCCGCAATTACAACAAGCAAGCGAATGAGCAGAACTGGGCCAattacagcacagagcagaacCGCCTGGGTCAAAATGGCAGCACCATCTCCAACTCTCATGCGCAAGCCTTTGACTTTCCAGACGACACCCACGATCATAAGAAACTCCCCCCAGACCATGAACTGCAGCCTCTGTCTCTAATGGACCCCAGGCCATCGAGTAGAGCTAGCAGCCGGGTTAGCAGTAGACCTCGACCAGGTGACCTCGATGTCTAG

Function

NR:

description
PREDICTED: gap junction alpha-1 protein

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007267 cell-cell signaling biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0055085 transmembrane transport biological_process
GO:0008283 cell population proliferation biological_process
GO:0031101 fin regeneration biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0035143 caudal fin morphogenesis biological_process
GO:0051049 regulation of transport biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060272 embryonic skeletal joint morphogenesis biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022832 voltage-gated channel activity molecular_function
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07372 GJA1, CX43; gap junction alpha-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004323 True 849 mRNA 0.53 1 42901035 42901883

Neighbor

gene id symbol gene type direction distance location
AMCG00004319 hsf2 coding downstream 148218 42738503 ~ 42752817 (-)
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding downstream 209956 42689048 ~ 42691079 (-)
AMCG00004317 NA coding downstream 213470 42679324 ~ 42687565 (-)
AMCG00004316 clvs2,LOC107675233,LOC107675107 coding downstream 240428 42640409 ~ 42660607 (-)
AMCG00004312 NA coding downstream 534100 42364767 ~ 42366935 (-)
AMCG00004324 NA coding upstream 12259 42914142 ~ 42920194 (-)
AMCG00004322 NA coding upstream 20793 42922676 ~ 42925799 (-)
AMCG00004325 NA coding upstream 73869 42975752 ~ 43035278 (-)
AMCG00004333 NA coding upstream 565286 43467169 ~ 43485249 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding upstream 583386 43485269 ~ 43514436 (-)
G7336 NA non-coding downstream 163185 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 181344 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 587917 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 636058 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 680851 42219958 ~ 42220184 (-)
G7419 NA non-coding upstream 333935 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 966580 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1181214 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 1275763 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 1434388 44336271 ~ 44336570 (-)
AMCG00004313 NA other downstream 370029 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 833371 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3051912 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5519082 37324010 ~ 37381953 (-)
AMCG00004336 NA other upstream 501070 43402953 ~ 43450255 (-)
G7608 NA other upstream 1619031 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1638280 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1721307 44623190 ~ 44712051 (-)
G7868 NA other upstream 3405043 46306926 ~ 46307319 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G683757 LOC106571373 unknown NC_048572.1 CM023226.2 20626950 ~ 20632899 (+)