AMCG00004316 (clvs2,LOC107675233,LOC107675107)


Basic Information

Item Value
gene id AMCG00004316
gene name clvs2,LOC107675233,LOC107675107
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42640409 ~ 42660607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004316
GAAAGGTTTCCTGAACACTTGTCAATTGTTAATTGATTATTGATACCTGAGGGTGTGCTGCTCTGGGTGTTagcaggctgctgctgctgcttcatttCCACGGCTGTCTGTGAAGCTCCACAGCGCTAAAATGACTCACTTGCAAGCGGGCTTGTCCCCCGAAACCCTCGAGAAAGCCAAGGTGGAGCTGAAGGAAAACCCCGACACTCTGCACCAGGACATCCAGGAGGTGAGGGACATGATCATCACCCGCCCGGACATCGGCTTTCTCAGGACGGACGATGCCTTCATCCTGCGGTTCCTCAGGGCGAGGAAATTTAACCATTTCGAGGCGTTCCGGCTGCTGGCTCAGTATTTCGAGTACCGCCAGCAGAACCTGGACATGTTCAAGAGCTTCAAAGCCACCGACCCAGGCATCAAGCAGGCTCTGAAGGACGGCTTTCCCGGGGTGCTGTCCCACCTGGACCGCTATGGCAGGAAGATTCTGGTTCTCTTCGCGGCGAACTGGGACCAGAGCAGGTATACGTTTGTGGATATTTTGCGAGCTATTCTGTTGTCACTGGAAGCCATGATTGAAGATCCAGAGCTACAAGTGAATGGATTTGTGCTGATTATTGACTGGAGCAACTTCACCTTCAAGCAAGCCTCAAAACTAACGCCAAGCATGCTGAGACTTGCCATAGAAGGCCTCCAGGACAGCTTCCCGGCTCGGTTTGGAGGAATCCACTTTGTCAATCAGCCCTGGTACATCCACGCTCTATACACCGTCATTCGGCCCTTTCTGAAGGACAAGACGAGAAAGCGGATATTCATGCATGGCAACAATTTAAACAGCTTACACCAGCTTATTCATCCTGAGATCCTGCCCTCAGAGTTTGGGGGAATGCTTCCCCCATATGACATGGGCACCTGGGCCAGAACATTGCTGGACCACGAGTATGATGAAGAGACTGAATTCAGCCCAGAGTCCTACAACCTGTCAGTCACAGACCTAGAAAAAGACTTGTCTCCAAAAGCCATGAAGAGatcCCAGTCAGTAGTGGAGCCTGGAGTCCTAAAACGGCCCGAGAAAGAGAAAAGTGACGAAGAAAACATGCAACCATTGCTTTCACTAGACTAAAGGATTGCAACCCCTGCTGCTGAGAGAATACTGTCCCGCAATAGGGCTGGTACCTGTGACCTtcccagaaataaaataataataaggagaagcaagaatggaagaaaataaatggacaaTAATGAGACAGCTTTCTCACTCAAACAGcagttacaaaatatatattgaacaaAAGCAGTATTAAATCTAAAACCGTGGACTTGTGGGTTGAagatgaatgaataaatcaatattttattgttaagtgccaatttaaaattgtaaatacacTTGGGTTCTACACTTTGAATTTCCAGTTCATTGTAGAAAGAACACCTGTACAGACCGAATTGAGTAttcttgtatgtatttgttgtgaaatattttgtgaCAAACTGTTGGCTGAAGGAAAGCATTCACAATAGAGTAAGATATTTGCTCACACAGGACTTAAACTGATCTAAAACAAAGACACCTGCAGCTCAGGATTTCACAAATCATGAAACGTATAGTACGCAATTTGCACTTAATGTGGCTGCATTGCGAGAATGATGTGGATCTTATAAATTTCTCACACTGGAATCCAATGAATCGCTAATTTTTCAATTTACTACCAATCGCTAGTCAACACAGGATGTGTTTTCCACTGGAACCTCTgtgatacaaaatacataaattcaggTATCCACATCTTGAAGCAAACATCCCTTTAAGCTTAAAGCCATAACATATTTCAGACAGAGAGTGGTTCACTCTTCTTTCGACAAGATAAGAAACTAAAACATCTCTTAGAAACTCTCAAactgagagaggaaaaacaTACGCTCCTGTTCTGCTATTGAAAGTGTCAAAGGAGACGTTTAAGTATCACTCTTTCTTTAATTTGGGCTATTTGAAAGTTCATATTTGACATCCCAACTGATCCTGTTTAgattaaagcaatatttaatatctatttcaaaattacagagtacattttaaaatagatttcttTTTAGGAAAAAATTATGTGCCAACAGAAGCAGTgtgaattattttgtgtatttagatTGGCAGATTACTGTCAGCCTCCTTAATCAAAAACTTTTTCACTATTTAAACACAGGCTGTACTGGccttattgtattgcatttcataATCTAACTATGTGACATTTTGCAGGGTTCTGTGCCTAAGCTGTGTGAGTCAAATAGCAGAAGTAAGCAGAAAAGAAAGTGAGCTTAAAGGATAATGAAACTgggtgacaaaaaaaaactgtcttctGCTTCCAGAAATATGATCCAGGAAACAGTGTTGGATAGTACATTAAGAAGTAGGTGAAGTGTTACTTGAAAACTGatctaaatataattatttttctcatgtcTTATAATACGGTattcaaattatacattaatctCTTGTATAAAAGGTAAACTCAAATGAGGGGCAGGGAGGTTGGCTTAGAGAAACGAACATCACCCTTTATCCCCTGACCAGTGAACAACCGCTCTGCTTAcctgttgtttttgtgctgcTTCAGACACAGATCACTCTGTCTGGCCTTTTAGTATTCACTCTTCAGTGCTGGTTATGTCACTTATAACTGTCCTGAACTATGGCAGATAGTACTTCTTCTGAAGGAAACACAAATCCGAGATGGAAATGTCATCTCTAACTTGGTGACAGTTCAAGTTCAAGATCACAAGGCTTTGGGTGGAAAGGGTGCTATACTATACTATCAgtgttacattgtatttttggaaaagtctttctgtattatttaaaggtAGATGGTGACAGATCAGAAACACGTGGGTGTTTGCAAACAGTGAATTGATGATTCTGTATCAAGAACAGCAACTGTCATGTGTGATAAGGATCGTGGCAGGTCTTTCTGTGGACGTCCTGCGAGAGATGTGTGTTATCAGTGACACATGTTCAAAGCATTTCTCGTCctggtttaatatttatttgaggAGTCTGTGCACTGTTTCCCATCACAATGACAGTTTTTTGCTGTatcatgttttttgtaaatgtaatcatgtaaattattatatttcttaaaacgAGCTGATTTGTagagaatacaaaaaacaactgtcttgtttaaaaaaaatgcctttCTGTTTGTCATTCTGTTGAACATGGTCTATAAGTTGAAGGTTTaagcagtgtatgtgtgtattaaataCCTGCAGCATTTACTTAACAGGGATTTGTGCCATATACATCATATGAGAGGGTTTCTAACCTAAGAAAAATCTCAATTGTTACCAAAGccatctgatttttttttccaaacaagCATTCtccaacacattttaattaagacagTGCTCTGACCGATTGTAATCGCATTTGCAAGTCAtcactatttattttgggaTAATTCTGTGTACTGTAACTTTAATTGAAATCTgtaattaagacattttttgtgtttgaatttcaAGGTTCGTATGCAGAGAAAAAAAGGGTAAAGACTGCTTGTAATGTGCATACAGGAAAGAGCATTATCTAGGCATGGCATCTGTATAGAAGTCCACTGAGTAAAGAATAATGTATCTTACAATGAATGTGTGCAAAGAGGATATTCTATGTATTAAGGTCAATGTAGAGGGCTTACTGCTTTAAATGACTGCgttaaacaaacaagcaaacaagaacaacaataaacatTGACACGCTCTTTTGACATCGCTC

Function

symbol description
clvs2 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Predicted to be involved in lysosome organization. Predicted to be located in Golgi apparatus and early endosome membrane. Predicted to be active in clathrin-coated vesicle; endosome; and trans-Golgi network. Orthologous to human CLVS2 (clavesin 2).

NR:

description
PREDICTED: clavesin-2 isoform X1

GO:

id name namespace
GO:0007040 lysosome organization biological_process
GO:0006810 transport biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0005215 transporter activity molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004316 True 3787 mRNA 0.40 5 42640409 42660607

Neighbor

gene id symbol gene type direction distance location
AMCG00004312 NA coding downstream 273474 42364767 ~ 42366935 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding downstream 278421 42355551 ~ 42361988 (-)
AMCG00004310 LOC107549081 coding downstream 303797 42333224 ~ 42336612 (-)
AMCG00004307 otof coding downstream 490234 42118653 ~ 42150175 (-)
AMCG00004306 otof coding downstream 531810 42101689 ~ 42108599 (-)
AMCG00004317 NA coding upstream 18717 42679324 ~ 42687565 (-)
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding upstream 28441 42689048 ~ 42691079 (-)
AMCG00004319 hsf2 coding upstream 77896 42738503 ~ 42752817 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding upstream 240428 42901035 ~ 42901883 (-)
AMCG00004324 NA coding upstream 253535 42914142 ~ 42920194 (-)
G7270 NA non-coding downstream 327291 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 375432 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 420225 42219958 ~ 42220184 (-)
G7243 NA non-coding downstream 550782 42087804 ~ 42089627 (-)
G7192 NA non-coding downstream 615669 41985243 ~ 42024740 (-)
G7335 NA non-coding upstream 32147 42692754 ~ 42719691 (-)
G7336 NA non-coding upstream 65305 42725912 ~ 42737850 (-)
G7419 NA non-coding upstream 575211 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 1207856 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1422490 44083097 ~ 44089780 (-)
AMCG00004313 NA other downstream 109403 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 572745 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 2791286 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5258456 37324010 ~ 37381953 (-)
G6441 NA other downstream 5271587 37367985 ~ 37368822 (-)
AMCG00004336 NA other upstream 742346 43402953 ~ 43450255 (-)
G7608 NA other upstream 1860307 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1879556 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1962583 44623190 ~ 44712051 (-)
G7868 NA other upstream 3646319 46306926 ~ 46307319 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018310 clvs2 coding NC_007131.7 CM002904.2 40269891 ~ 40319890 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_02502175_02516608 CLVS2 coding CI01000029 null 2502156 ~ 2517380 (-)