CI01000029_03590053_03594170 (VGLL2, VGLL2A)


Basic Information

Item Value
gene id CI01000029_03590053_03594170
gene name VGLL2, VGLL2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3589653 ~ 3594904 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03590053_03594170.mRNA
ACTTTGATGGTAAAAGGGAATTAAGCCACCCGTAAGGACGATTCATAGGGGAGCTATTGATCTCTGGTGTAGAGATACGTCAAAACGCATCGTTTCATAGAAGTCCGATTCGCGGAGGAGTCGTTTATTTGAACCGATTCACGAAACGATTTGCAGTTTCTAATCACGCGAACTTTCAACACGATGAGGTAACATACACTTTTGTTCAAAATATCAAACAGGACAGCATTGTACTACAGAGGTTAGCACGTTTAATATCTCAGGCTGACGTCATGAAACTGGAAGACATTTAAAATTAGTAAAAAACTGACTAAATTTACAACTCTTGTTATTTAGCAACATGGTCGCTGGTCTAGCTAATAACCAGCTAACATGTTCCAAAACACACCTACCAGCTTATAATGTTGTTTTGTTTTAAGATTATATATAATTTTACTGCAAGCAAGAACCTGCATACAGTGCACAAGGACTTCTGGAAACACTTTGAGCGATGATTCAGACGAGTCGACTCATTAAACCATTCATAATTTGAATGAACCGAATCTCTTAAATGAATCAGACTCGTGCGTAAAGACTGAGTACAGAACATAAAAGGTGCTCAGTGCGCTTCAGCCGCAATCGACGCGGAGCTTCATTTTCTGTCTGTAGACACTGAACCAGCGCTTTATTTCAAATGAAGCGTCCTCTCATTCCACTAATAAGTTTTTATACGTGATATAACAGCTGTCTTCGCCATGAGCTGCTTGGATGTCATGTATCAAGTTTATGGTCCACCTCAGCCTTATTTTGCCGCAGCATACACACCTTATCACCATCAGAAATTGGCATTTTACTCGAAAATGCAAGAATCACCAGAAACCGTCAGCGGAAGCAGCTCTTCCTTTTCCAACCTCTCCGGGCCACCCATAAAAGAGGAGGACTGCGCCCGAGAGAAAGATCACCCACCGGAGGCGGAGTACATCAGCTCCAGATGTGTGCTTTTCACGTATTTCCAAGGGGACATCAGTTCAGTGGTGGATGAACATTTCAGTCGAGCTTTGAGTCAGTCTAATAGTTACGCACCTGGATCCACCAACAGCAAGACCGCGAGAGGTACATCGTCCTGGAGAGAAGGCTCATTCCCTATGAGCCAGAGAAGCTTCCCTCCGTCGTTCTGGAACAGCGCGTATCAGCCGTCGGTCTCAGCATCTCTCAGCAGCGCCCTGGGTTCCTCCCACACAGACCTCCCCTTCTCAGCGGACCCTTATTCCACCGCGTCTCTACACAGTCACCTCCACCAAGCCACCCCGGAGCCCTGGCACCCCTCTCACCACCATCACCCTTACTCACTCAGCGGAGCCATCGGCACCCAGGGATCCGCTTACCCCCGGCCCTCCATGCACGATATGTACGGAACGCACTTTGACCCCCGTTACAGCTCTCTGCTCGTGCCCTCGGTGCGGCCGCATAGACTTCCCCCAGCCACGGTACCCGCACCTGGAACCTCGCCGTGCGATATCAGCAAGAGCGAGCCAGGCAGCTCGGCGTGGACCGGAGCTTTCACAGCGGCGAGCTCTGATATGAGTCTGAACATGGATACAGATTCTCATCTCACTTGCAGCTCGGCGCTACACCCTCTGCAGCGGGACCATCCTAAGCTGAAAGTGGATAAGAACCCTTCGGATGAGTGCAAAAATCTCTCAGTAAAGTGGAGCAAACATACTGTAGTGCACCTGTCATCAACAACTGTTGTGGAACTTAGCAGACGCACAGACAACGGCGCTATGTGCCGTTTGACCGAGCGAGCGCCCTGGATTTCATAAAAGAGGCGTTTTGTTGTATCTGGACACACGGCGAAAGGGAACAACTGGTTTGGCTTTTCATTTTTTTGAGGCGTGGTGTGGGTTCGGCTGGAAGTAGATACAAACACTATTAAGCCGTACTGTATATACTTTATGTGTCTTAGTGTGTCCAGTGCTACATGTAGGATCAAACAGCATGATGATATGCATCAGAAATATTGATTCTTTCATTTGTACTTTTTTAAGAACCACTTTTAGTCGCCGTCAGCTTTGGTTGACGTCTCACCACGATGTATTTGAATGTATAACATGTAATATATTACCTTTGAAAAGTATTTTTCCAGTGCATTGAGGAATATGAGGTGTTATCTGTTTTTATCAGTTGTGTATCTTCATCCTTTGAAGAAAAAATCGAAATAAA

Function

symbol description
vgll2a Acts upstream of or within embryonic viscerocranium morphogenesis and neural crest cell development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin bud; head muscle; notochord; and trigeminal ganglion. Orthologous to several human genes including TDRD15 (tudor domain containing 15).
vgll2 Predicted to enable protein C-terminus binding activity and transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03590053_03594170.mRNA True 2202 mRNA 0.46 5 3589653 3594904

Neighbor

gene id symbol gene type direction distance location
CI01000029_03534096_03563671 NA coding downstream 25982 3534052 ~ 3563671 (-)
CI01000029_03503783_03509429 NUS1 coding downstream 80224 3503663 ~ 3509429 (-)
CI01000029_03397097_03444565 SLC35F1 coding downstream 145088 3396139 ~ 3444565 (-)
CI01000029_03382508_03395312 NA coding downstream 194341 3382350 ~ 3395312 (-)
CI01000029_02957572_02962601 NA coding downstream 626299 2957427 ~ 2963354 (-)
CI01000029_03625037_03636215 RFX6 coding upstream 29800 3624704 ~ 3637033 (-)
CI01000029_03698769_03707177 NA coding upstream 103668 3698572 ~ 3707883 (-)
CI01000029_03723621_03726874 NA coding upstream 128283 3723187 ~ 3727070 (-)
CI01000029_03746973_03752660 PLG coding upstream 152032 3746936 ~ 3752660 (-)
CI01000029_03769171_03775841 UNC93A coding upstream 173883 3768787 ~ 3775841 (-)
G154017 NA non-coding downstream 15197 3574064 ~ 3574456 (-)
G153952 NA non-coding downstream 231298 3348381 ~ 3358355 (-)
G153985 NA non-coding downstream 278672 3310710 ~ 3310981 (-)
G153373 NA non-coding downstream 540324 3049059 ~ 3049329 (-)
G153333 NA non-coding downstream 675422 2912932 ~ 2914231 (-)
G154040 NA non-coding upstream 39081 3633985 ~ 3634543 (-)
G154046 NA non-coding upstream 92948 3687852 ~ 3688128 (-)
G154047 NA non-coding upstream 93323 3688227 ~ 3688470 (-)
G154057 NA non-coding upstream 141327 3736231 ~ 3740719 (-)
G154137 NA non-coding upstream 407272 4002176 ~ 4002475 (-)
G153891 NA other downstream 303099 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 996851 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2295530 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 865439 4460159 ~ 4463540 (-)
G154415 NA other upstream 1391204 4986108 ~ 4990990 (-)
G156542 NA other upstream 3575463 7170367 ~ 7170951 (-)
G156495 NA other upstream 3771423 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location