CI01000029_03534096_03563671


Basic Information

Item Value
gene id CI01000029_03534096_03563671
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3534052 ~ 3563671 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03534096_03563671.mRNA
CGCCAAGTTCCTGAGTGGCTGCTGGAGACTCAGCTGTCTGGAAGGAAAAAAGGAGTTGGTGGTGCCATCACAGGTGTGAGTGCCTTTACCATGGGAGACAATGATGGATGTGGTCATTATGTCCTGGGCCAAGAGAGTGGTGTCCTGTCTTCCAAGAACTACCCAGGAACTTACCCCAACAACTCCTGGTGTGAATGGCGGATCCGTGTACCCATTGGCCACACCATTGTCCTCAAGTTTGGAGACCTGAACATGGAGACGAAGGACTGCGAGTCAGACTATTTAAAGGTTCTAAAAGGATATGGCGCGGAAAATGTGTACTGGGAGTACTGCGGTGGTCAGATGCCCAAACATACTCAGATTCACACGGACTCCAGCGAACTGACTGTCCGCTTTCGTAGCAGCCAGCACATTTCTGGAAGAGGATTCCTGCTGTCATACTCCACAGAAAACCACAAAGACATGGAGGTGCAGGAAGTAGGTCTGTCATCCTGTTGTGATGCTTATGTCCTGTTGTTCTTGTTTTTGTTGAGTCGGTGGACCTGTTTCCTTTGTGGAGACACTTATCATCTGCTCCATTTTTACCCTCATTGTGTGGCCTCCTCTGCTTTCCTCCTCAGAGCTGCTGACATGCTTGGACAGAGGCAGTCATTTCCCAACATCAAAGTACAGACATCAGTTTTGTGTAAAGCTGCGGTGCATGCTGGGGTCATCATGGACCAGTTTGGAGGACCAATCACAGTGGAGGAGCGCCGAGGGCTCAGTCACTACCCTGCGGTCAGAGCCAACGGCATCCAGTCAAAAGATGGCTCGCTGTCTGAAACCCTCTTCACGTTTGTGACAAACGATTGCAGCCAACAGACTGTTCTTCAACCGGTGGCCACAACTACAAGCTTGTCATCACACAATATCTCCTCTGATGGGTCTGAAGTTGACTGGTTCCCTAACAGCACCCAACCGGGTATCTCCGATGACCTCAACCATAACCATCCACAGTGGCTACAGATTGATCTTGGGGAAAAGAGGAGGATCACAGGTATTCTGACCACAGGCTTGACCATCACAAACTTTGAATATTTTGTGAAAAACTACAAGATCGAGTACAAGGAGAGGAATCGCTGGCGGACATTTGTCCAGTATAATAACTCTAATGATATGATTTTTGAAGGAAATACTGACAGCCTCCACCAAACACGCAACACCTTCCATCCCTCCATCGTAGCACGAAGCATTCGTGTCGTGCCTCAACAGTGGCACCGGATAATTGCCATGAAAGTGCAGCTGCTGGGCTGTCCTTATGTGAAACCCATCCCAGTGAATTCATCGTCTCAGGTGACACAGGAGGCTCAGCCTACACAGCCCATACACAGTGACATGACGAAACCAGTGCCCTCTCAGGCTGATCTTGTTAATATGGTTGTAATAATTGTGCCCACCATTCTTCTTGTGATCCTGCTCCTGGTGGGAATCTGCCTGGTTAAAATGCTATACAATAAGAAGACAAAGGATAACACGTACGGCTCTGCAGAGACACAGCATACAGGCTGTTGGAGACAGATAAAACAGCCGTTTGCCAGACACCAGTCCACAGAGTTCACCATCAAATACAGCTCTGAGAAAGACCCCATCCAGAAGCTGGACCTGGTAACCAGTGCAATGGCAGCCGAATACCAGCAGCCGCTCATGCTCGGCACGGACACTGTCTCTCGAAAAGGCTCGACGTTCAGGCCCATGGACACCGAGGCCAAAGACAAGGACAACGAGGCTACTTCTCACTACGACCACCTGCAGACGGGCATCCAGTACGCTTTGCCACTGACCAATCAGGAGCCAGAGTACGCCACGCCCATCATCGAGCGCCACGCCTTCCGCAAAGATCCCTTCCTCCCTGATCCCAGCTACAGCGTCCCAGGGGTGGTACTAAACAAAAGCCCATCATTTCGAGCAGTAGAGGGCAGTAACTGCAGGAAAGTGATCGGAGGACTGTCTGGGGGCTACCAGACTCCCCAGATCAAAATAGACAGGGGGAATTACCCAGAGGACATCTACGACAGCCCTAAAATCGCGAAGCCCGTCGTGAAGAACGGGAGTTGCTTGGCGTACCAGAAACCCCAGATTAAGTCGCCGGTGCAGGAGTGCTATTCCACTCCGAGAGACTGTGTCAGACTGCCCTTCTCTGGACTCAGACCGGACCCGGAGGGCAGTAGGTCCGACCCAGAGGGCAGCAGCTCAGAGGGAAGCTGAGAAAAACCATACTGTGATGTTCCAGATTTACCTGACTCAACAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03534096_03563671.mRNA True 2288 mRNA 0.51 14 3534052 3563671

Neighbor

gene id symbol gene type direction distance location
CI01000029_03503783_03509429 NUS1 coding downstream 24623 3503663 ~ 3509429 (-)
CI01000029_03397097_03444565 SLC35F1 coding downstream 89487 3396139 ~ 3444565 (-)
CI01000029_03382508_03395312 NA coding downstream 138740 3382350 ~ 3395312 (-)
CI01000029_02957572_02962601 NA coding downstream 570698 2957427 ~ 2963354 (-)
CI01000029_02837412_02857934 NA coding downstream 676112 2836763 ~ 2857940 (-)
CI01000029_03590053_03594170 VGLL2, VGLL2A coding upstream 25982 3589653 ~ 3594904 (-)
CI01000029_03625037_03636215 RFX6 coding upstream 61033 3624704 ~ 3637033 (-)
CI01000029_03698769_03707177 NA coding upstream 134901 3698572 ~ 3707883 (-)
CI01000029_03723621_03726874 NA coding upstream 159516 3723187 ~ 3727070 (-)
CI01000029_03746973_03752660 PLG coding upstream 183265 3746936 ~ 3752660 (-)
G153952 NA non-coding downstream 175697 3348381 ~ 3358355 (-)
G153985 NA non-coding downstream 223071 3310710 ~ 3310981 (-)
G153373 NA non-coding downstream 484723 3049059 ~ 3049329 (-)
G153333 NA non-coding downstream 619821 2912932 ~ 2914231 (-)
G153299 NA non-coding downstream 658256 2875591 ~ 2875796 (-)
G154017 NA non-coding upstream 10393 3574064 ~ 3574456 (-)
G154040 NA non-coding upstream 70314 3633985 ~ 3634543 (-)
G154046 NA non-coding upstream 124181 3687852 ~ 3688128 (-)
G154047 NA non-coding upstream 124556 3688227 ~ 3688470 (-)
G154057 NA non-coding upstream 172560 3736231 ~ 3740719 (-)
G153891 NA other downstream 247498 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 941250 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2239929 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 896672 4460159 ~ 4463540 (-)
G154415 NA other upstream 1422437 4986108 ~ 4990990 (-)
G156542 NA other upstream 3606696 7170367 ~ 7170951 (-)
G156495 NA other upstream 3802656 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location