CI01000029_03625037_03636215 (RFX6)


Basic Information

Item Value
gene id CI01000029_03625037_03636215
gene name RFX6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3624704 ~ 3637033 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03625037_03636215.mRNA
ACAGACATTACAGTCAAACTGTCCCACAACAACTCAACACCTAAAACGTTTAGATTAATAAAATAATTTTACTGTCTAGTCTTTGCGTTTATTTGTCCATTTTACAATTTTCCTCTTTGCATGCTTCAGTTGTGGCGTTTTTAAACTCTGCCTGTTACACATGGCCAGAATCTTAGAATCTTCTCCTCACTGTTGCAGATAAAACCAGCAAAAAAGTTCCAAATATATATTGCGTAAATGGATGTAAACGAAAAGTAACAGGAGGCTGGCTGGCTCTGATTGGGTCTATAGCCGAGCTTCAAGATTTTCAGATTTCAAGGAGATGATATCCCTCTTGGTTAATCATTAAATCCCAGAATCCATTGCCAGTCTTCTGTAAATAAGATAAATGACCCTAAGGCACTCACCTCTGTGACGCACCATTTCAGAGAGAGCAGAGCTTTAATTAAGACTGGAAGGTGTTATCTTACCCATTCTTGGATTAATGAACTTTTACAGGATTAATCTTATATTTCAGCTGCTATTTTTAGAGTTTCCATCATGCTACAGGTTTATTTTGTGAGCATTTGTTTCTAGTGAGGAAAGAGGAAAGCAACACACATAGTTGACAAATTGTTTAAATGTTTTTTTTGGATGCTTTGGAGATGTGTATCATTTCAGGAATGGATATATGCATCACACTGCCAAGCGTGAGAATGGGCCGTGTCGATTTTGGAATGTTTTAACAATTTAGTTTTTGAGGGGCACTATTTTTTATTATTTCACTTGGTGGTTTTAATTTTGCATTCCAGTTTTTCTTTTTTAATTTCTCCTTGAACATGCCAATGAAAAGAAATATAGGGAGTCCATTGAAGAATGACACGTTTCATCAACTACAAGCGTCGCAGACAAAGAGAGCTTGCAAAAACGCAGATGACCTCCAAGGGACAATTCTTGTTGACCAAGACAATCTCGGAAAAAACATGTTTTTCAAAGCCAGGCTTGATGAGGAGGAGGATTCTGGAATTAAATCAGAAGCCGATGAAAGTAATGGAAGCATTTCCTCTGAAGAGGACCTGGGCCACCTGGATTATTCTAAGACGTTCTCTGTGAAACAAACTGTGCCAAAGAAAAGCATCAGTCAGATCATCAAGGACAAGAAGAAACAGACTCAGCTTACTTTACAATGGCTTGAGGAAAATTACATAGTTTGCGAAGGTGTTTGCCTGCCACGGTGCATCCTCTACGCTCATTATTTAGACTTTTGTCGGAAGGAGAAATTAGATCCAGCTTGTGCTGCCACTTTTGGGAAGACCATAAGGCAGAAATTTCCTTTGCTTACAACACGAAGGCTTGGAACCAGAGGCCATTCGAAGTATCATTATTATGGTATTGGAATCAAGGAGAGCAGTGCGTATTATCACTCTGTGTACTCAGGAAAAGGTTTGACACGATTCTCTGGAAGCAAGCTCAAAAATGAGGGAGGATTCACCAGGAAATACTCTCTTAGTTCTAAAACAGGAACTCTTTTACCTGAATTCCCAAGTGCACAGCATTTAGTGCTCCAGGAGTCTGTTTCAAAAGAGAAGATCCAGAACTTTCTGCTTCACTTCTGGCAAGGAATGCCTGAACATCTCCTTCCACTGCTAGAGAATCCAGTTATTGTGGACATCTTCTGTGTGTGTGACTCTATACTCTACAAAGTTCTGACCGATGTTCTCATCCCTGCTACTATGCAGGACATGCCAGAGAGTCTTTTGGCAGATATTCGAAATTTTGCCAAGCACTGGGAACACTGGATGGTGTCTTCCTTGGAGAATCTCCCAGAAATCCTCTCAGACAAGAAACTGCCGATAGCTCGACAGTTTGTGTCCTCCTTAAAGAGACAGACCTCCTTTTTACATCTTGCACAGATTGCAAGACCTGCACTTTTTGACCAGAATGTTGTGACTTCTATGGTGAATGATATTGATAAGGTTGATCTGAATAGTATTGGTTCTCAAGCACTCCTTTCAAATGCAAATGACCAAGATTCAGACTTCTACTCTGAATATGACTCCATTTCAGTGTTTCAAGAGCTGAAAGATCTCCTGAGGAAAAATGCCACAGTAGAGTCTTTCATTGAATGGCTGGACTCGGTGGTTGAGCAGAAAGTCATTAAGCCCAGCAAGCAAAATGGTCGGTCGGTGAAGAAGCGAGCTCAAGATTTTCTTCTGAAATGGAGTTTCTTTGGAGCACGAGTGATGCACAATCTCACCCTAAACAATGCTACCAGCTTTGGCTCTTTCCACCTCATTCGGATGCTTTTGGATGAGTACATCCTGCTAGCAATTGAAACACAATTCAACAACGACAAAGAGCAGGACCTTCAGAATCTACTGGAGAAATATATGAGGAGTGCAGATGCTAGTAAGGCTACATTCACCGCCTCCCCAAGTTCCTGCTTTTTGGCCAATCGGAATAAATCCGGTGTGGCGTCCAGTGATTCGACTGTCAAGGACGAGAACCCTCCCGAACATGATTTTCTGTCACTCGCAGCTGCACAGCAGGGGCTCGGGGCCAGTACTATTGTGTACCATAGTACCGATCTGGACAACTTTACTATAACTGCCATGATCAACCGTAGCAGTGTGATCAACCAGGGCCCGATGGCTGTGAGGCCGCAGAGCAGCTGCCCCATCCAACCACAAGTGTCCTGCCAGACTTTCCCCGACACCATGTACCAGAGTCTGCACAGTGCAAGCTCTGGCTCCTACCCCAACTCCTCTTACTACCAGCCTGTGTTCAGAGCTCAGACGCACACTCCAACATCAGCCTATCAGGCTCATGCCGAAAGCGGACGCTACGCACCCTTTTCTGGACATCAACTGACTAAAGATTGCTTTAGCAGCAGCTGTACCGTGTCTCCCTACAGCTCGAGGGTTGCATCGGCTGGATACGCAGCCACAGGTGACCCTGTGATGGACACTGAGGGCGTACAGCTGCTGGACTCCACAGGGTACAGCTTTGGAGGAAGTGCTGCCAGTGGGGATGGATGTTCAGGTCCAGTTTGCAGCTCTGGGCACAATGGATATTACAGCAGCAGTGGTTACGTGGACGCTCAGAGGATGGGTACGTTTATTGATCAGCATGTGTCAGTTATCAGCAGCGTGAGCAGCATTCGCTCCGTTTCGGCCTACGCTGAAGTGCACGACCCTCTGAACATCCTGGATGACACGAGCAGGAAGACAAGACCCTACTACACTGAACTGTCTGCAATGGGCTCACACACAGCAGGATCCAGCATCGCTCATTCCTGCTCTGTCACAACACCCTGCATGTATGGAAGTCCTTCTCCTTATCACTCCCAGAATGCACTCCTGCCTCTCCAGGGGACCACAGAGATCAGAGAAATTGTGTCGTCCCTGCCCCCCATCAACACTGTGTTCATGGGCTCAACTGGTGGGCCACCCTGACTGATACCTTATCTGTAATTCTACATCTCTATTATACTCACAGGAGGTGAGACATGTTTTAGTTCATCTCCATATCTTACAGTAAATATTTCATTGTCACATACATTGCAGATAGGCTAATTGATTTTTTTATTGTATGATTTGAATTGGGGGGTTTTTTGTGCTAAAAAATGACAGGTAATGATCCAATTATTATCTTTTGTTTAAGGTTGTGTAGTATATACTGTAATATAATATCATTTCATCATTGTTCTTAGTTTAGCATTCTTGTATATACTAATGAAAAAATCTTGTTCTCATTATTCTGGAGGCTGAGATTTATTATTTAATAAA

Function

symbol description
rfx6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endocrine pancreas development. Predicted to be located in nucleus. Is expressed in intestine; pancreas; pancreas primordium; and pancreatic bud. Orthologous to human RFX6 (regulatory factor X6).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus biological_process

KEGG:

id description
K19521 RFX6; regulatory factor X 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03625037_03636215.mRNA True 3767 mRNA 0.43 18 3624704 3637033

Neighbor

gene id symbol gene type direction distance location
CI01000029_03590053_03594170 VGLL2, VGLL2A coding downstream 29800 3589653 ~ 3594904 (-)
CI01000029_03534096_03563671 NA coding downstream 61033 3534052 ~ 3563671 (-)
CI01000029_03503783_03509429 NUS1 coding downstream 115275 3503663 ~ 3509429 (-)
CI01000029_03397097_03444565 SLC35F1 coding downstream 180139 3396139 ~ 3444565 (-)
CI01000029_03382508_03395312 NA coding downstream 229392 3382350 ~ 3395312 (-)
CI01000029_03698769_03707177 NA coding upstream 61539 3698572 ~ 3707883 (-)
CI01000029_03723621_03726874 NA coding upstream 86154 3723187 ~ 3727070 (-)
CI01000029_03746973_03752660 PLG coding upstream 109903 3746936 ~ 3752660 (-)
CI01000029_03769171_03775841 UNC93A coding upstream 131754 3768787 ~ 3775841 (-)
CI01000029_03799874_03822017 NA coding upstream 162822 3799855 ~ 3822181 (-)
G154017 NA non-coding downstream 50248 3574064 ~ 3574456 (-)
G153952 NA non-coding downstream 266349 3348381 ~ 3358355 (-)
G153985 NA non-coding downstream 313723 3310710 ~ 3310981 (-)
G153373 NA non-coding downstream 575375 3049059 ~ 3049329 (-)
G153333 NA non-coding downstream 710473 2912932 ~ 2914231 (-)
G154046 NA non-coding upstream 50819 3687852 ~ 3688128 (-)
G154047 NA non-coding upstream 51194 3688227 ~ 3688470 (-)
G154057 NA non-coding upstream 99198 3736231 ~ 3740719 (-)
G154137 NA non-coding upstream 365143 4002176 ~ 4002475 (-)
G154140 NA non-coding upstream 419704 4056737 ~ 4057258 (-)
G153891 NA other downstream 338150 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1031902 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2330581 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 823310 4460159 ~ 4463540 (-)
G154415 NA other upstream 1349075 4986108 ~ 4990990 (-)
G156542 NA other upstream 3533334 7170367 ~ 7170951 (-)
G156495 NA other upstream 3729294 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018332 rfx6 coding NC_007131.7 CM002904.2 42506612 ~ 42534504 (-)