Gene
RNA
| Item | Value |
|---|---|
| gene id | G154137 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 4002176 ~ 4002475 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU175024 | True | 300 | lncRNA | 0.46 | 1 | 4002176 | 4002475 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_03988871_03998768 | NA | coding | downstream | 3408 | 3988590 ~ 3998768 (-) |
| CI01000029_03949550_03958610 | NA | coding | downstream | 43432 | 3949306 ~ 3958744 (-) |
| CI01000029_03942459_03946094 | NA | coding | downstream | 56082 | 3942436 ~ 3946094 (-) |
| CI01000029_03927561_03936968 | NA | coding | downstream | 65208 | 3927499 ~ 3936968 (-) |
| CI01000029_03925339_03926640 | NA | coding | downstream | 75508 | 3925165 ~ 3926668 (-) |
| CI01000029_04017725_04032225 | EFR3BB, CCL33.2, EFR3B | coding | upstream | 14718 | 4017193 ~ 4032225 (-) |
| CI01000029_04046704_04057783 | NA | coding | upstream | 44171 | 4046646 ~ 4058256 (-) |
| CI01000029_04071708_04075046 | NA | coding | upstream | 68249 | 4070724 ~ 4075299 (-) |
| CI01000029_04108560_04110587 | MIXL1 | coding | upstream | 105923 | 4108398 ~ 4110871 (-) |
| CI01000029_04115189_04121331 | NA | coding | upstream | 112688 | 4115163 ~ 4121331 (-) |
| G154057 | NA | non-coding | downstream | 261457 | 3736231 ~ 3740719 (-) |
| G154047 | NA | non-coding | downstream | 313706 | 3688227 ~ 3688470 (-) |
| G154046 | NA | non-coding | downstream | 314048 | 3687852 ~ 3688128 (-) |
| G154040 | NA | non-coding | downstream | 367633 | 3633985 ~ 3634543 (-) |
| G154017 | NA | non-coding | downstream | 427720 | 3574064 ~ 3574456 (-) |
| G154140 | NA | non-coding | upstream | 54262 | 4056737 ~ 4057258 (-) |
| G154144 | NA | non-coding | upstream | 59707 | 4062182 ~ 4062422 (-) |
| G154146 | NA | non-coding | upstream | 62097 | 4064572 ~ 4064850 (-) |
| G154147 | NA | non-coding | upstream | 66113 | 4068588 ~ 4068822 (-) |
| G154148 | NA | non-coding | upstream | 66778 | 4069253 ~ 4070441 (-) |
| CI01000029_03698769_03707177 | NA | other | downstream | 294924 | 3698572 ~ 3707883 (-) |
| G153891 | NA | other | downstream | 715622 | 3248777 ~ 3286554 (-) |
| CI01000029_02589994_02592379 | NA | other | downstream | 1409374 | 2587549 ~ 2592379 (-) |
| CI01000029_01293143_01293964 | BATF3 | other | downstream | 2708053 | 1292249 ~ 1294123 (-) |
| CI01000029_04460778_04463540 | FKBP1B | other | upstream | 457868 | 4460159 ~ 4463540 (-) |
| G154415 | NA | other | upstream | 983633 | 4986108 ~ 4990990 (-) |
| G156542 | NA | other | upstream | 3167892 | 7170367 ~ 7170951 (-) |
| G156495 | NA | other | upstream | 3363852 | 7365007 ~ 7371921 (-) |
