RNA id: TU174089


Basic Information

Item Value
RNA id TU174089
length 206
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G153299
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2875591 ~ 2875796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCTTTCTTTTGGCTGCAATATTATCATTGCATCAAACCGACGCTTGACACCCTACAGCCAAGTAGCACGTCCGTTCTGCGCCTGCATAAGAAGAAATGCCTTTCTGTACCAGCAGGTGGCAGTAGCTGAACAGCCAATCAGAATGATCAGATGGCCCGACTGACCAACGAGCTCCGACGCCGATTCAACATGTCGAATCGGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174079 lncRNA downstream 25217 2850037 ~ 2850374 (-) True G153289
TU174078 lncRNA downstream 26005 2849367 ~ 2849586 (-) True G153288
TU174077 lncRNA downstream 26738 2848603 ~ 2848853 (-) True G153287
TU174076 lncRNA downstream 27152 2848204 ~ 2848439 (-) True G153286
TU174075 lncRNA downstream 35930 2839378 ~ 2839661 (-) True G153285
TU174126 lncRNA upstream 37136 2912932 ~ 2914231 (-) True G153333
TU174171 lncRNA upstream 173263 3049059 ~ 3049329 (-) True G153373
TU174864 lncRNA upstream 434914 3310710 ~ 3310981 (-) True G153985
TU174830 lncRNA upstream 472585 3348381 ~ 3358355 (-) True G153952
TU174896 lncRNA upstream 698268 3574064 ~ 3574456 (-) True G154017
CI01000029_02837412_02857934.mRNA mRNA downstream 17651 2836763 ~ 2857940 (-) True CI01000029_02837412_02857934
CI01000029_02764957_02770946.mRNA mRNA downstream 104198 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
CI01000029_02762066_02762926.mRNA mRNA downstream 111823 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02753815_02761288.mRNA mRNA downstream 114064 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_02742245_02743081.mRNA mRNA downstream 131367 2741953 ~ 2744224 (-) True CI01000029_02742245_02743081
CI01000029_02957572_02962601.mRNA mRNA upstream 81631 2957427 ~ 2963354 (-) True CI01000029_02957572_02962601
CI01000029_03382508_03395312.mRNA mRNA upstream 506554 3382350 ~ 3395312 (-) True CI01000029_03382508_03395312
CI01000029_03397097_03444565.mRNA mRNA upstream 520343 3396139 ~ 3444565 (-) True CI01000029_03397097_03444565
CI01000029_03503783_03509429.mRNA mRNA upstream 627867 3503663 ~ 3509429 (-) True CI01000029_03503783_03509429
CI01000029_03534096_03563671.mRNA mRNA upstream 658256 3534052 ~ 3563671 (-) True CI01000029_03534096_03563671
TU173923 other downstream 282789 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 1581468 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174756 other upstream 372981 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 830427 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1584547 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2110312 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 2110389 4986185 ~ 4987425 (-) True G154415

Expression Profile