RNA id: TU175411


Basic Information

Item Value
RNA id TU175411
length 340
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G154498
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5144527 ~ 5144866 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAATTCGCAACTTTGGTGAACATAGCTATTGAAGACGGGAGTAATGATGCTGAAAATTCAGCTTTGCATCACAGGAATAAATTACATTTTCAAATATATTAAAACAGAAAACTGTTATTTGAAATTGTAATAATATTTCACAAAATTACTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTGGTGAGCAGAAGAGATTTCTGTGAAATAAGCAGTACTTTTGGTCGCATATAAATTCAGATTACAAAGTCATAATTTCTCCTGCGTTTTTAACCCGGTCTTATCATGAGAAGTCATAATATGTTCCATGAAAGGGCAAAATTGTACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175348 lncRNA downstream 137550 5006497 ~ 5006977 (-) True G154445
TU175315 lncRNA downstream 153537 4986108 ~ 4990990 (-) False G154415
TU175345 lncRNA downstream 170563 4972971 ~ 4973964 (-) True G154442
TU175341 lncRNA downstream 177596 4966670 ~ 4966931 (-) True G154438
TU175340 lncRNA downstream 177928 4966281 ~ 4966599 (-) True G154437
TU175413 lncRNA upstream 9653 5154519 ~ 5154881 (-) True G154500
TU175664 lncRNA upstream 117674 5262540 ~ 5262782 (-) True G154730
TU175665 lncRNA upstream 124985 5269851 ~ 5270384 (-) True G154731
TU175666 lncRNA upstream 126154 5271020 ~ 5271284 (-) True G154732
TU175672 lncRNA upstream 149347 5294213 ~ 5296076 (-) False G154735
CI01000029_05055841_05068089.mRNA mRNA downstream 76400 5055385 ~ 5068127 (-) True CI01000029_05055841_05068089
CI01000029_05046771_05054238.mRNA mRNA downstream 90289 5046221 ~ 5054238 (-) True CI01000029_05046771_05054238
CI01000029_05008936_05021217.mRNA mRNA downstream 123310 5008042 ~ 5021217 (-) True CI01000029_05008936_05021217
CI01000029_04997226_05004488.mRNA mRNA downstream 139592 4997226 ~ 5004935 (-) True CI01000029_04997226_05004488
CI01000029_04898116_04905715.mRNA mRNA downstream 238716 4897624 ~ 4905811 (-) True CI01000029_04898116_04905715
CI01000029_05181056_05182090.mRNA mRNA upstream 36032 5180898 ~ 5182260 (-) True CI01000029_05181056_05182090
CI01000029_05186117_05187142.mRNA mRNA upstream 40995 5185861 ~ 5187312 (-) True CI01000029_05186117_05187142
CI01000029_05189829_05190863.mRNA mRNA upstream 44897 5189763 ~ 5191058 (-) True CI01000029_05189829_05190863
CI01000029_05205497_05206423.mRNA mRNA upstream 60603 5205469 ~ 5207463 (-) True CI01000029_05205497_05206423
CI01000029_05208608_05209357.mRNA mRNA upstream 62774 5207640 ~ 5209523 (-) True CI01000029_05208608_05209357
TU175317 other downstream 157102 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 157102 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 667315 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1437275 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 1857973 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 2025501 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 2221461 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 2221461 7366327 ~ 7369547 (-) False G156495

Expression Profile