G154735


Basic Information

Item Value
gene id G154735
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5294213 ~ 5358001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU175672
TTTTTTTTCAGAAGCTGCATCTGAATTGGTATTTAGATATATTTACAGACCAAAACAGTTTGGTTACCAACATTCTTCAAAAGATCTTCTCTTATGTTCCGCAAAAGAAAGAAAGTCATACAGGTTTGAAACGACATGAGGAAATGTAAATAAAAAGAATTTTCAAATTTTGTGCAAACTATCCCCAAAATATGAAATTGAAACTAAAACTGCCAGTAGTTGGCAGTAAACTTCTAAATGAGTAAGTCATTGAGTCATTCATAAATTCGATTAATTCAAATGGCTGATTCATTCAGGAATGAAGTAAATGGTTCTCTTTATGAATGGTGCTTTGAATAATTGGTTCACCCGACTAATTTGCTCAAAACGTGGATTCATTCAGAAATGAAACACTTTACAGGTAATATTTTTGTTGGCAAAATTGAGACAATAACAAAACTGTGGAAGCTTGTTTCCAGCACTGAATAAAAATAAAGAAGGTAATTGCGACTTTTTTTCTTACAATTTTAAGTTTGCATCTTTCAATTCTGACTTTTTTTCAGAATTGCATGATATAAACTCGCAATTGTCAATGTCAAAATTTTTTCCCTCCGAATTGGACTTTATATTCCACAATTATGACTTTATAACTCACAATTGTGAGAAAAAAAGTCAGAATTGTGAGACAAAAAGTCGCAATTATCTTTTTAATAATTTTATTCCGTGGCAGAAACAAGCTTCCATAGAAAACAGACAATATTTTGTCCAAAATATAAAACAATATTAACTTTATTTATTGAACTGTTGTATAAAATCCATATCACATTTGCACTCATGCTATTCTGGACAAATTTTATTCCCATAATTAATTAAATTAACACATTAAATCGATAGCCTTATATATATATATATATATATATATATATATATATTTATATTACGTATATAGTTTTTGGACCTGAGTGAATCTGACCTTACCAGTCAAAAGTTTAGGCACATCTACTCAATCTTTATTACTATTTTATACATTTTAGATTAATAGTAAGGTCATTATAACTATGAAACAACAAATGGAAATATGGGAATTATGTAGTGTTCATAATGTTCAACTAAAGAAAACTTTCTTACACTCCTTTTTTGTCTACACTCCAGATTTGCTCACTATGGATGATGAGAAATGGATTCTAGTGTCTAATGTTTTGACCTGCAGTGTATTCTCAGAGTCTTTCTTCAAATAAAGTGTTTGAGAGCAGTTTAAAAGTATAGTGCTCTTATACTGTACTTCTTTAAAGCAGCAGCTTTATACTGACTGATATTTTCAGCCATTGAAATCTCATATTTAGGGCATTTTACTATAAGGAATGTTTGCTTCTACAACAAATCAGATGGGTGGAAGATGCGCAGAGTGGAATGATAATTGGTTAACAGTAGCAATATTGAAATCATTTTCTAGGTTAAACTCTATATACAGTCTCTGTGGAATGTTGTAACACAGTGCTTTAAAAACATGAGTTGAAATAATTTCCTGTTGTAATGGATAGCACACCAAAGGTGCTGTTTATAGAGTTGAACTGTTATTAAAGAGTCCATTAATGACAATATCTTAAGTCAAGGCAGCTTCACTTGGTGACAAAACTTCGTAACTCATTAAAAACATGCCAGTGCAAACATTGGGCCTTCAGATAGAGTTGACAAACACTCATTTTTTCACAGAAGCGTAGACAATCAAACCAATAACAACAGCCACCACAACCAGAACAATGATGAAGATGAAAATCTTCTTGCGG
>TU175677
ATATACATATATATACATATATATANNNNNNNNTATATATATATATATATATATATATTTATATTACGTATATAGTTTTTGGACCTGAGTGAATCTGACCTTACCAGTCAAAAGTTTAGGCACATCTACTCAATCTTTATTACTATTTTATACATTTTAGATTAATAGTAAGGTCATTATAACTATGAAACAACAAATGGAAATATGGGAATTATGTAGTGTTCATAATGTTCAACTAAAGAAAACTTTCTTACACTCCTTTTTTGTCTACACTCCAGATTTGCTCACTATGGATGATGAGAAATGGATTCTAGTGTCTAATGTTTTGACCTGCAGTGTATTCTCAGAGTCTTTCTTCAAATAAAGTGTTTGAGAGCAGTTTAAAAGTATAGTGCTCTTATACTGTACTTCTTTAAAGCAGCAGCTTTATACTGACTGATATTTTCAGCCATTGAAATCTCATATTTAGGGCATTTTACTATAAGGAATGTTTGCTTCTACAACAAATCAGATGGGTGGAAGATGCGCAGAGTGGAATGATAATTGGTTAACAGTAGCAATATTGAAATCATTTTCTAGGTTAAACTCTATATACAGTCTCTGTGGAATGTTGTAACACAGTGCTTTAAAAACATGAGTTGAAATAATTTCCTGTTGTAATGGATAGCACACCAAAGGTGCTGTTTATAGAGTTGAACTGTTATTAAAGAGTCCATTAATGACAATATCTTAAGTCAAGGCAGCTTCACTTGGTGACAAAACTTCGTAACTCATTAAAAACATGCCAGTGCAAACATTGGGCCTTCAGATAGAGTTGACAAACACTCATTTTTTCACAGAAGCGTAGACAATCAAACCAATAACAACAGCCACCACAACCAGAACAATGATGAAGATGAAAATCTTCTTGCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175672 False 1766 lncRNA 0.31 2 5294213 5296076
TU175677 True 913 lncRNA 0.32 2 5294213 5358001

Neighbor

gene id symbol gene type direction distance location
CI01000029_05240748_05241758 TAAR10D, TAAR10B, TAAR10C, TAAR10A coding downstream 52192 5239888 ~ 5242021 (-)
CI01000029_05236272_05237282 TAAR10D, TAAR10B, TAAR10C, TAAR10A coding downstream 56681 5236115 ~ 5237532 (-)
CI01000029_05229020_05230030 TAAR1B coding downstream 64074 5227179 ~ 5230139 (-)
CI01000029_05219364_05220392 TAAR12E, TAAR12F, TAAR12J, TAAR12C coding downstream 73680 5219327 ~ 5220533 (-)
CI01000029_05214256_05215284 TAAR12E, TAAR12F, TAAR12C coding downstream 78784 5214219 ~ 5215429 (-)
CI01000029_05361419_05364642 NA coding upstream 3138 5361139 ~ 5364701 (-)
CI01000029_05395318_05400668 RMDN3 coding upstream 36974 5394975 ~ 5400668 (-)
CI01000029_05410136_05418911 EIF2B2, EIF2B2.L, EI2BB coding upstream 52135 5410136 ~ 5418911 (-)
CI01000029_05421189_05424167 MGC64308, TMED10, TMEDA, MGC85513 coding upstream 62442 5420443 ~ 5424439 (-)
CI01000029_05429198_05430689 FOSAB coding upstream 70708 5428709 ~ 5430823 (-)
G154732 NA non-coding downstream 22929 5271020 ~ 5271284 (-)
G154731 NA non-coding downstream 23829 5269851 ~ 5270384 (-)
G154730 NA non-coding downstream 31431 5262540 ~ 5262782 (-)
G154500 NA non-coding downstream 139332 5154519 ~ 5154881 (-)
G154498 NA non-coding downstream 149347 5144527 ~ 5144866 (-)
G154809 NA non-coding upstream 17844 5375845 ~ 5376097 (-)
G154810 NA non-coding upstream 23335 5381336 ~ 5382206 (-)
G154812 NA non-coding upstream 26653 5384654 ~ 5385074 (-)
G154793 NA non-coding upstream 30775 5388776 ~ 5389607 (-)
G154815 NA non-coding upstream 79715 5437716 ~ 5438081 (-)
G154415 NA other downstream 306788 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 817001 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 1586961 3698572 ~ 3707883 (-)
G153891 NA other downstream 2007659 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 2701411 2587549 ~ 2592379 (-)
G156542 NA other upstream 1812366 7170367 ~ 7170951 (-)
G156495 NA other upstream 2008326 7365007 ~ 7371921 (-)

Expression


Co-expression Network