CI01000029_05421189_05424167 (MGC64308, TMED10, TMEDA, MGC85513)


Basic Information

Item Value
gene id CI01000029_05421189_05424167
gene name MGC64308, TMED10, TMEDA, MGC85513
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5420443 ~ 5424439 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05421189_05424167.mRNA
AAACTGAATTTATTTTCATTTTGTCACATACGAGGGTATTTTTCCCTGAGTCAAGTGCCAATTTCAGACCTTGCTTCTGAATGCACAACGTCTCAAAAAGAAAAAAGAACAAACATTTTTGTACGTGTGTTCTAGAGACGTCTATAGATCTCCACGAGGAGGCGCTGTAGATACACAGAGAATAGCAGAGGCAGTGCGCATGCGCGGAACGAGAGCGCAGGCGCAGTGAGTAGCTCGACCCGGGCCTGCAGTAGTGGAGCGATCAGCTCGTCATGGCGCGGTTCCGTGTGCTTTCGCTCTCGATCTCATTATTGTTTGTGGTTCAGTCGGTCGTGTCGATCTCATTCTACTTACCGGTGCGCAGCAGAAAGTGTCTGCGGGAGGAGATCCATAAAGATGTGCTCGTTACCGGAGAATACGAGATCAGCGAGCAGCTGAACACTAAAACCAACCTGAAGATCACAGACTCCTCTGGACACATCCTCTATGTGAAAGAAGATGCAACCAAAGGCAAGTTTGCCTTCACCACAGAGGACTATGACATGTTTGAGGTGTGCTTCGAGAGCAAGTCACCTATGGGAACTGGAAGAGTTCCTGACCAACAGATCAACTTGGACATGAAGCATGGTGTTGAGGCCAAAAATTATGAAGAGATTGCCAAGGTAGAGAAACTGAAGCCCCTGGAGGTGGAGCTCCGTCGGCTGGAGGATCTTTCCGAGTCTATTGTCAACGACTTCGCCTACATGAAGAAGAGAGAGGAGGAGATGAGAGATACTAATGAGTCCACCAACACACGCGTGCTGTACTTCAGCATCTTCTCTATGTGCTGTCTGATCGGTCTGGCCACATGGCAGGTCTTCTACCTGCGTCGTTTCTTCAAGGCCAAGAAGCTCATTGAGTAAAATCTGCCTGTACAATCAGGGACCCAGAACTACTTCCTGACATCAGAACCTCCGGCCCCTGACATTTGCTTTGCCTCGGCGATCCGTTCTGGTCGCCACAGGTGACCTGAAGTTTATCGGGAGTGGACGTGCATCAGGGAATTCTCTGGGAAGCGATTGATGCTTGACGGCCAAATTGTCTTTCAGTGCGTGTACATTTTTGATACAAGCTTGCTCAGTATCATTTGGAAAAAACACCCAGTCTTTCAAAAAAAAATTCTGCTTTATTTTTTTTTTTTTGTATTTATACTAAATGACAGCACAAGCCCCTATAACTGATAAAAGATGCGCTCCTGTGAGAGAAACTTTGTGGTCATCTGTCGGTTATTGAATGTGTGTGTTAATTACTGTAATTATTATTTGGAAGGATAGAATGATTGTTTCAGCCTTTAGTCATGAAGTTCTCATGAACTGATGTGTTTAGCTATCTTTCAAACACAAGTAGAAAGACTTGTTTTTGAAAATGTAAAGCCATTTTGTCAAAATGAAGTCCCACTCACTGCAAGTGAAGAGCGAATGCACATCAGAGCTTCAAGCTAAAATTTACCCTTTTGACTTTGAGAAATTTACTAATTTTTTTTAAAGCAGTTTTATTTTGGGGGGCAGAATCTAATTTTAGTTTGTTTATGGGAAAGCCTGAGTTCATCTGTAATTAAAGTCTTTATTTGTTGATTGTTAGTTGTTAGTTTCTCCACAGACTGAATAAA

Function

symbol description
tmed10 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in axis; hatching gland; notochord; pancreas; and polster. Orthologous to human TMED10 (transmembrane p24 trafficking protein 10).

GO:

id name namespace
GO:0048208 COPII vesicle coating biological_process

KEGG:

id description
K20352 TMED10, ERV25; p24 family protein delta-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05421189_05424167.mRNA True 1648 mRNA 0.44 5 5420443 5424439

Neighbor

gene id symbol gene type direction distance location
CI01000029_05410136_05418911 EIF2B2, EIF2B2.L, EI2BB coding downstream 1532 5410136 ~ 5418911 (-)
CI01000029_05395318_05400668 RMDN3 coding downstream 19775 5394975 ~ 5400668 (-)
CI01000029_05361419_05364642 NA coding downstream 55742 5361139 ~ 5364701 (-)
CI01000029_05240748_05241758 TAAR10D, TAAR10B, TAAR10C, TAAR10A coding downstream 178422 5239888 ~ 5242021 (-)
CI01000029_05236272_05237282 TAAR10D, TAAR10B, TAAR10C, TAAR10A coding downstream 182911 5236115 ~ 5237532 (-)
CI01000029_05429198_05430689 FOSAB coding upstream 4270 5428709 ~ 5430823 (-)
CI01000029_05528046_05533580 USH2A coding upstream 103539 5527978 ~ 5533580 (-)
CI01000029_05540251_05550264 ESRRGB coding upstream 115634 5540073 ~ 5551565 (-)
CI01000029_05562089_05568581 GPATCH2 coding upstream 137361 5561800 ~ 5568728 (-)
CI01000029_05598686_05598998 NA coding upstream 173749 5598188 ~ 5598998 (-)
G154793 NA non-coding downstream 30836 5388776 ~ 5389607 (-)
G154812 NA non-coding downstream 35369 5384654 ~ 5385074 (-)
G154810 NA non-coding downstream 38237 5381336 ~ 5382206 (-)
G154809 NA non-coding downstream 44346 5375845 ~ 5376097 (-)
G154735 NA non-coding downstream 62442 5294213 ~ 5358001 (-)
G154815 NA non-coding upstream 13277 5437716 ~ 5438081 (-)
G154818 NA non-coding upstream 16563 5441002 ~ 5441322 (-)
G154798 NA non-coding upstream 27550 5451989 ~ 5452551 (-)
G154821 NA non-coding upstream 47536 5471975 ~ 5472504 (-)
G154761 NA non-coding upstream 88711 5513150 ~ 5514086 (-)
G154415 NA other downstream 433018 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 943231 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 1713191 3698572 ~ 3707883 (-)
G153891 NA other downstream 2133889 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 2827641 2587549 ~ 2592379 (-)
G156542 NA other upstream 1745928 7170367 ~ 7170951 (-)
G156495 NA other upstream 1941888 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G24782 NA non-coding NC_053114.1 CM020911.1 93035 ~ 94652 (-)
bowfin (Amia calva) AMCG00000460 tmed10,LOC106608292 coding CM030141.1 CM030141.1 15271455 ~ 15276495 (+)
mexican tetra (Astyanax mexicanus) G24772 tmed10 non-coding NC_035899.1 CM008302.1 39382242 ~ 39387475 (+)