RNA id: TU175666


Basic Information

Item Value
RNA id TU175666
length 265
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G154732
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5271020 ~ 5271284 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCATCCCAGTTTTCCAAAAAGAACTTCAAATTTTGATTCATCTGACCACAGAACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAATGCCTGCGCTTCTGGATCATGTTTAGATATGGCTTCTTTTTTGACCTATAGAGTTTTAGCTGGCAACGGCGAATGGCACGGTGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175665 lncRNA downstream 636 5269851 ~ 5270384 (-) True G154731
TU175664 lncRNA downstream 8238 5262540 ~ 5262782 (-) True G154730
TU175413 lncRNA downstream 116139 5154519 ~ 5154881 (-) True G154500
TU175411 lncRNA downstream 126154 5144527 ~ 5144866 (-) True G154498
TU175348 lncRNA downstream 264043 5006497 ~ 5006977 (-) True G154445
TU175672 lncRNA upstream 22929 5294213 ~ 5296076 (-) False G154735
TU175677 lncRNA upstream 22929 5294213 ~ 5358001 (-) True G154735
TU175775 lncRNA upstream 104561 5375845 ~ 5376097 (-) True G154809
TU175776 lncRNA upstream 110052 5381336 ~ 5382206 (-) True G154810
TU175778 lncRNA upstream 113370 5384654 ~ 5385074 (-) True G154812
CI01000029_05240748_05241758.mRNA mRNA downstream 28999 5239888 ~ 5242021 (-) True CI01000029_05240748_05241758
CI01000029_05236272_05237282.mRNA mRNA downstream 33488 5236115 ~ 5237532 (-) True CI01000029_05236272_05237282
CI01000029_05229020_05230030.mRNA mRNA downstream 40881 5227179 ~ 5230139 (-) True CI01000029_05229020_05230030
CI01000029_05219364_05220392.mRNA mRNA downstream 50487 5219327 ~ 5220533 (-) True CI01000029_05219364_05220392
CI01000029_05214256_05215284.mRNA mRNA downstream 55591 5214219 ~ 5215429 (-) True CI01000029_05214256_05215284
CI01000029_05361419_05364642.mRNA mRNA upstream 89855 5361139 ~ 5364701 (-) True CI01000029_05361419_05364642
CI01000029_05395318_05400668.mRNA mRNA upstream 123691 5394975 ~ 5400668 (-) True CI01000029_05395318_05400668
CI01000029_05410136_05418911.mRNA mRNA upstream 138852 5410136 ~ 5418911 (-) True CI01000029_05410136_05418911
CI01000029_05421189_05424167.mRNA mRNA upstream 149159 5420443 ~ 5424439 (-) True CI01000029_05421189_05424167
CI01000029_05429198_05430689.mRNA mRNA upstream 157425 5428709 ~ 5430823 (-) True CI01000029_05429198_05430689
TU175317 other downstream 283595 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 283595 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 793808 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1563768 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 1984466 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 1899083 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 2095043 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 2095043 7366327 ~ 7369547 (-) False G156495

Expression Profile