RNA id: TCONS_00050824


Basic Information

Item Value
RNA id TCONS_00050824
length 2442
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_025949
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1352555 ~ 1364946 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aTGAAGAAGAAAGCAGAATATATATTTGAACACAGTGAAGAAGTCGATCTGAAGACTATTTACACAGAGCTGTTCATCACACAGGGAGATATGAGAGATGTCAATCAGGAGCACGAGATCCTGACAATTGATGACGCttttaacagaaaacaaacacaggACAAGCCAATCAAATGTAAAGATATGTTTACTGAACTGAAGAAGAAGAGTAATAAAAAAACAGTGCTGACAAAGGGCATCGCTGGCATTggaaaaaccgtctctgtgcacaAGTTCATCCTGGACTGGGCAGAAGGGGAAGTCAGTGAGGATATAGACTGTGTGTTCCTGCTTCCATTCAGGATGATCAACATGATTAATGATAAAGAGTTCAGTCTGCATGAGCTTCTGATGGAGTTTTATTCTGGACTGAAGGGTCTGGAAAACTCAAAGCTGTATGAGAAATGTAATATAGCATTTTTATTTGACGGGCTTGATGAGAGTCGTCTACCTTTGAATTTTAACCGTGGAACACTGAATACAGTTGAGACGAGATCATCTGTAGATGTCTTGTTCACCAGTCTGGTTAAAGGGAATCTGCTTCCATCAGCTCTAGTCTGGGTGACCTCACGAccagcagcagccaatcagatcccTCTTGTATGTGTGGGATTGGTCACGGAGGTGCGAGGATTCACTGAGCAGCAGAGGGTGCAATACTTCAGAAAGCAGATCACAGATGAGAATCAGGCCTCCAGAATCATATCACACATCAAGACCTCTCGTAGTCTCTACATCATGTGCCATATTCCTGTGTTCTGCTGGATCACGGCCACTGTCCTTCAGCAAATACTCAAGGAGAAAACCGAGAACATCAGCACCACACTCACTGAGATGTACGttcacttcctgctgattcagatgaACATGAAGAGCCAGAAGTATGATGACCAAGAAGAAAGAGATTATACGAAGCTCTTAGATTCAAACAAAGAGATGATCCTGAAATTAGCCAGGCTGGCCTTCAAACAGCTAAAGGATGGACAGATTGTGTTCTATGAGAAAGATCTGCAGGAGTGTGGCATTGATGTGAGTGTAGAAACTGAGTTCACTGGAATGATCGCTGAGATCTTTAAGAAGGAACGTGGACTCCATGAAAAGAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTCCTCGCTGCACTGTATGTGTTCTTCTGCTTTCTGGAGAGGAACAACGATGAGCTTCAGTTTTTCTTTGAGGAGTCACAAAGTACAACCAGAGGAAAACTTCAGCTCCATGACTTGGTAAAGAAGGCCATCGATAAGGCAATGTTTAGAAAGAGTGGGCATCTGGACCTGTTCCTGTTTCTGCGGTTTCTGATGGGCATTTCACTGGAATCCAGTAATAAACTTCTCATAGGGCTGCTCAAACACACTGAAGACACCACAGAGAGCATCAGAAAAATAACTGAGCATGTTAAACAGCTGCAGGAAAAGAGCATCTCAGAGGAAGCTTCGGTGAACCTATTTTACTGCTTGCTTGAACTCAACGATCAGTCATTACATGAGGAAATCCAGAGTTACCTCAGTGCACAAGCAGACCCAGGGAGAAAACTGTCTTCTTCAATGTGCACAGTGCTGCTCTATGTACTGCTCATGTCCGAGAAGGTGCTGGATGAGTTCAACCCGAAGAGGTTCACCTCATCTGAATCAAACTACAGGACACTCGTTCCAGCTGTGAGGTCATGCAGAAAGGCCCTGTTTGATGGCTGTGGCCTTGATGAAACCTGCTGTGATGCtgtgtcttcagctctacaatcctcaaactgtgttctgagagagctggacctcaGTAACAATGCCCTGCAGGACTCAGGAGTGAACATGATCGCTGaaggactgaagagtcaacactgtaaactggagatacTGAGactgGGCatgtgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgccCTGCCAGATTCAGGAGTGAaacttctctctgatggactgaagagttcAGACTGTAAGCTGGAGACACTCAGgttggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtccaaactgtacactggagacactgagattatctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgagttCAAACCCTgtacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctcccGAAAACTGGAGGacccaaactacacactggaaaCACTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159328

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052407 lncRNA downstream 19796 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052889 lncRNA downstream 69308 1268899 ~ 1283247 (-) True XLOC_025946
TCONS_00052888 lncRNA downstream 187625 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00052887 lncRNA downstream 206002 1132906 ~ 1146553 (-) False XLOC_025940
TCONS_00052886 lncRNA downstream 324142 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052408 lncRNA upstream 91196 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00050832 lncRNA upstream 149684 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052890 lncRNA upstream 221888 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00052891 lncRNA upstream 260411 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052892 lncRNA upstream 648378 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00050823 mRNA downstream 13335 1323732 ~ 1339220 (-) False XLOC_025948
TCONS_00050822 mRNA downstream 35265 1303862 ~ 1317290 (-) True XLOC_025947
TCONS_00050820 mRNA downstream 69308 1260350 ~ 1283247 (-) False XLOC_025946
TCONS_00050821 mRNA downstream 89508 1261601 ~ 1263047 (-) False XLOC_025946
TCONS_00050819 mRNA downstream 120171 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050825 mRNA upstream 13152 1378098 ~ 1387292 (-) True XLOC_025950
TCONS_00050826 mRNA upstream 22489 1387435 ~ 1388936 (-) True XLOC_025951
TCONS_00050827 mRNA upstream 30133 1395079 ~ 1400309 (-) True XLOC_025952
TCONS_00050828 mRNA upstream 40558 1405504 ~ 1408487 (-) False XLOC_025953
TCONS_00050830 mRNA upstream 49924 1414870 ~ 1434135 (-) True XLOC_025953
TCONS_00050818 other downstream 145305 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050813 other downstream 630430 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 698814 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 720919 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 946945 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050829 other upstream 40558 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 497925 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 497925 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other upstream 504297 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050837 other upstream 515936 1880882 ~ 1888204 (-) True XLOC_025960

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000397_00039052_00066658.mRNA True 4083 mRNA 0.42 7 CI01000397 39052 ~ 67166 (+)