XLOC_025949 (FP236551.1)


Basic Information

Item Value
gene id XLOC_025949
gene name FP236551.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1352555 ~ 1364946 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050824
aTGAAGAAGAAAGCAGAATATATATTTGAACACAGTGAAGAAGTCGATCTGAAGACTATTTACACAGAGCTGTTCATCACACAGGGAGATATGAGAGATGTCAATCAGGAGCACGAGATCCTGACAATTGATGACGCttttaacagaaaacaaacacaggACAAGCCAATCAAATGTAAAGATATGTTTACTGAACTGAAGAAGAAGAGTAATAAAAAAACAGTGCTGACAAAGGGCATCGCTGGCATTggaaaaaccgtctctgtgcacaAGTTCATCCTGGACTGGGCAGAAGGGGAAGTCAGTGAGGATATAGACTGTGTGTTCCTGCTTCCATTCAGGATGATCAACATGATTAATGATAAAGAGTTCAGTCTGCATGAGCTTCTGATGGAGTTTTATTCTGGACTGAAGGGTCTGGAAAACTCAAAGCTGTATGAGAAATGTAATATAGCATTTTTATTTGACGGGCTTGATGAGAGTCGTCTACCTTTGAATTTTAACCGTGGAACACTGAATACAGTTGAGACGAGATCATCTGTAGATGTCTTGTTCACCAGTCTGGTTAAAGGGAATCTGCTTCCATCAGCTCTAGTCTGGGTGACCTCACGAccagcagcagccaatcagatcccTCTTGTATGTGTGGGATTGGTCACGGAGGTGCGAGGATTCACTGAGCAGCAGAGGGTGCAATACTTCAGAAAGCAGATCACAGATGAGAATCAGGCCTCCAGAATCATATCACACATCAAGACCTCTCGTAGTCTCTACATCATGTGCCATATTCCTGTGTTCTGCTGGATCACGGCCACTGTCCTTCAGCAAATACTCAAGGAGAAAACCGAGAACATCAGCACCACACTCACTGAGATGTACGttcacttcctgctgattcagatgaACATGAAGAGCCAGAAGTATGATGACCAAGAAGAAAGAGATTATACGAAGCTCTTAGATTCAAACAAAGAGATGATCCTGAAATTAGCCAGGCTGGCCTTCAAACAGCTAAAGGATGGACAGATTGTGTTCTATGAGAAAGATCTGCAGGAGTGTGGCATTGATGTGAGTGTAGAAACTGAGTTCACTGGAATGATCGCTGAGATCTTTAAGAAGGAACGTGGACTCCATGAAAAGAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTCCTCGCTGCACTGTATGTGTTCTTCTGCTTTCTGGAGAGGAACAACGATGAGCTTCAGTTTTTCTTTGAGGAGTCACAAAGTACAACCAGAGGAAAACTTCAGCTCCATGACTTGGTAAAGAAGGCCATCGATAAGGCAATGTTTAGAAAGAGTGGGCATCTGGACCTGTTCCTGTTTCTGCGGTTTCTGATGGGCATTTCACTGGAATCCAGTAATAAACTTCTCATAGGGCTGCTCAAACACACTGAAGACACCACAGAGAGCATCAGAAAAATAACTGAGCATGTTAAACAGCTGCAGGAAAAGAGCATCTCAGAGGAAGCTTCGGTGAACCTATTTTACTGCTTGCTTGAACTCAACGATCAGTCATTACATGAGGAAATCCAGAGTTACCTCAGTGCACAAGCAGACCCAGGGAGAAAACTGTCTTCTTCAATGTGCACAGTGCTGCTCTATGTACTGCTCATGTCCGAGAAGGTGCTGGATGAGTTCAACCCGAAGAGGTTCACCTCATCTGAATCAAACTACAGGACACTCGTTCCAGCTGTGAGGTCATGCAGAAAGGCCCTGTTTGATGGCTGTGGCCTTGATGAAACCTGCTGTGATGCtgtgtcttcagctctacaatcctcaaactgtgttctgagagagctggacctcaGTAACAATGCCCTGCAGGACTCAGGAGTGAACATGATCGCTGaaggactgaagagtcaacactgtaaactggagatacTGAGactgGGCatgtgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgccCTGCCAGATTCAGGAGTGAaacttctctctgatggactgaagagttcAGACTGTAAGCTGGAGACACTCAGgttggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtccaaactgtacactggagacactgagattatctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgagttCAAACCCTgtacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctcccGAAAACTGGAGGacccaaactacacactggaaaCACTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050824 True 2442 mRNA 0.45 5 1352555 1364946

Neighbor

gene id symbol gene type direction distance location
XLOC_025948 tmem106c coding downstream 13335 1323732 ~ 1339220 (-)
XLOC_025947 GRIN2B coding downstream 35265 1303862 ~ 1317290 (-)
XLOC_025946 tcf20 coding downstream 69308 1260350 ~ 1283247 (-)
XLOC_025945 si:ch1073-314i13.4 coding downstream 120171 1228132 ~ 1232384 (-)
XLOC_025944 NA coding downstream 145305 1207098 ~ 1207250 (-)
XLOC_025950 ddx47 coding upstream 13152 1378098 ~ 1387292 (-)
XLOC_025951 ddx47 coding upstream 22489 1387435 ~ 1388936 (-)
XLOC_025952 wbp11 coding upstream 30133 1395079 ~ 1400309 (-)
XLOC_025953 bglap coding upstream 40558 1405504 ~ 1434135 (-)
XLOC_025954 NA coding upstream 91196 1456142 ~ 1490157 (-)
XLOC_025941 NA non-coding downstream 187625 1163765 ~ 1164930 (-)
XLOC_025940 NA non-coding downstream 206002 1132906 ~ 1146553 (-)
XLOC_025939 NA non-coding downstream 324142 1011480 ~ 1028413 (-)
XLOC_025938 NA non-coding downstream 379756 972541 ~ 972799 (-)
XLOC_025956 NA non-coding upstream 221888 1586834 ~ 1685178 (-)
XLOC_025957 NA non-coding upstream 260411 1625357 ~ 1716973 (-)
XLOC_025959 BX465228.2 non-coding upstream 497925 1862871 ~ 1875971 (-)
XLOC_025960 BX465228.1 non-coding upstream 515936 1880882 ~ 1888204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000397_00039052_00066658 NA coding CI01000397 null 39052 ~ 67166 (+)