RNA id: TCONS_00050823


Basic Information

Item Value
RNA id TCONS_00050823
length 2315
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_025948
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1323732 ~ 1339220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacagaccaatgAAACCGAGCGGACTGACTGACAGGAGTTTAAGCTGAAGTGAATCTGAGGTATCTGCGTGTCTGCAGTTTGAGATTGCTGggctgtgagtgtgtttgtgatgggGGCGTCTCTGTGCCGGACAGACCGCTGGCTCTTGGTTGTCCCAGGCCGCAGACGCAGCGCTCATAAAGGCTGTCTGACGGGTGGAGACGAGTCTCTGGATGGGCTGGACCGACAGGAGGACATTGCTCAGTTCCCCTATGTAGAGTTCACCGGCCGCGACAGCATCACCTGCCCTACCTGCCAGGGCTCCGGACGCATCCCAGCAGGGCAGCTGAATGAGTTGGTTGCTCTGATCCCCTACAGCGATCAAAGGTTACAGCCTCGGAGAACGAAGCTGTATGTGGTGCTGTCAGTAATTCTGTGTCTGCTGGCGTCTTTTCTGGTGGCTTTCTTCCTGTTTCCACGTGCTGTGCTGGTGGTGGACGATGGCATCCGCTCCGTGACTGTGCACTTTGACCGAAACAACAGCAAAGTGCTCATCAACATGACGAGCTCGCTGAACTTCACCAACTCTAATTTCTTCACGGTGTGGGTGGACAGTGTGAGCTGTCAGGTGCTCTACATGAAGAGCGTCATTGGCTCTCAGCAGCTGGATAACGTCATCCACATTCAGCCCCTCAGCCAGAGACAGGTCAACTTCACTGTCAAGATGGAGATCGGAGGAAGCCTCTCTTATGTTTATGCTTTTTGCACAATGGCCACCATCAAGGTCCACAACATCGTGGTGTTCATGCAGACCTCAGTGAAAACCTCCTACATGGTGCGAGCGGGACAGAATACTGTGGAAACGTACCGCTACATCGACTGCGGCTCAAACTCCACCGTGCACCAGCCATCAGGACTCGCCTGGTCTAATCCTCAGAACAGGAAACTGCTCCGGTGAAAACTCAGCCGGTAGACGCTCGCTCATTTCTCAGAAGGCAGCTCCGTTTCTTTAATTCCTGTCACTGTACAAGCTCAACACATCCAATATGATGTACAATATCACTGAATCATCTCTCAGAACAGATGCTGCAGTCTCTCACTTACAGTTTAGTATTGTTTCTtgcccaaatatctaaaaatccagAAGCATTTTCCACACTAGCGCTAAATATAGTGCTGTTTTCAGGAATAAAGAGTCAAAATGCAGAGagattttcattaaaacaagccgAATAATCTGACAGTGAGGGAAGCAGAATACTCTTGATGTTATTCCTGATACAAGATCATTTCACTTCCTCCATCGTCAGATTATTCTGTTTGTTTTAAGGAGAATCTCTCTTGATTTTGACTCATTTCTTAAAGCAAGACTATATTTCATACTGGATtaggaaatgcttcttgattttcgagtttgtagatgttttgaTGAGTGTTTGGACTAGACACTGAAAGTTAGAGCAGCATGTGTTGCGGTGTGCTGGAAAGGGCTCTGCTTTCTTTGATCAGTTCTCTATCTTTATCATCTATTAGAGTTGCTGTACATGTATTTTTGCAGTGATTTGACCAAAAGggagattttatttaattattgacaGGATGCTGATGTGCACTTTAAAATACCTCttgctttaatttatttgatgttttttcttattGCCAAATGTCTGTCCTTGTGTTTGTAATGTCCAGTAATTCATCTGATTTCTGCTGATTATtctcttatttattcattttgttctgCAGTAAAACTCAACTTGAATTCATCAGTGACCAATAATCAGGATATATAGACTGAAATTATACATATTCCTGGCagattctgacttaaagttacttttactGACCCAGGCTTCTCCTACAAAAGAGTTAGAGGATGTGCAAGAGGCGTCATTCTGGAAAAATATACTTcatagcttttatttacatttgaacaaaaactttaggtcagaatttgccatGGGTGTGAATAGTTTGAGGTTTGACTGTAAGGTGTAGATGAAGTGTGTGGTCtcagtgttaatgtgtgtgtttctgatgtgAAGTGCAGATGTCTGCTGTGCGACGCTGAAGCTGAGGAGGAACCTGTTACACAGCAGTGACCTGCTTCAGTCTCTGCATCTGTGATGCCATGATAATGTGTTTCACCAAGCTTTAATTGATCAAATGCTGACAGATGCTCCTCATTGACAGAAGCAGCTTTACTGAGGCACTTTCTTTCTCTGCAGATTTGGCTGAATAATTGACTTTTAGTCGTGTTTTTCATTGTCGGACATGTTTAAAAATAAGCTGATAATAAAGTGTTGGATTGAGTTTTTGCTCTG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-562 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM106C (transmembrane protein 106C).

Ensembl:

ensembl_id ENSDART00000172000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052889 lncRNA downstream 40485 1268899 ~ 1283247 (-) True XLOC_025946
TCONS_00052888 lncRNA downstream 158802 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00052887 lncRNA downstream 177179 1132906 ~ 1146553 (-) False XLOC_025940
TCONS_00052886 lncRNA downstream 295319 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052406 lncRNA downstream 350933 972541 ~ 972799 (-) True XLOC_025938
TCONS_00052408 lncRNA upstream 116922 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00050832 lncRNA upstream 175410 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052890 lncRNA upstream 247614 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00052891 lncRNA upstream 286137 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052892 lncRNA upstream 674104 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00050822 mRNA downstream 6442 1303862 ~ 1317290 (-) True XLOC_025947
TCONS_00050820 mRNA downstream 40485 1260350 ~ 1283247 (-) False XLOC_025946
TCONS_00050821 mRNA downstream 60685 1261601 ~ 1263047 (-) False XLOC_025946
TCONS_00050819 mRNA downstream 91348 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050817 mRNA downstream 119391 1191370 ~ 1204341 (-) True XLOC_025943
TCONS_00050824 mRNA upstream 13335 1352555 ~ 1364946 (-) True XLOC_025949
TCONS_00050825 mRNA upstream 38878 1378098 ~ 1387292 (-) True XLOC_025950
TCONS_00050826 mRNA upstream 48215 1387435 ~ 1388936 (-) True XLOC_025951
TCONS_00050827 mRNA upstream 55859 1395079 ~ 1400309 (-) True XLOC_025952
TCONS_00050828 mRNA upstream 66284 1405504 ~ 1408487 (-) False XLOC_025953
TCONS_00050818 other downstream 116482 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050813 other downstream 601607 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 669991 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 692096 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 918122 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050829 other upstream 66284 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 523651 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 523651 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other upstream 530023 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050837 other upstream 541662 1880882 ~ 1888204 (-) True XLOC_025960

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000196_00248950_00258533.mRNA True 1240 mRNA 0.52 8 CI01000196 248950 ~ 258533 (+)
bowfin (Amia calva) AMCG00008746 True 1093 mRNA 0.53 8 CM030126.1 10618726 ~ 10625169 (+)