RNA id: TCONS_00050821


Basic Information

Item Value
RNA id TCONS_00050821
length 696
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_025946
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1260350 ~ 1283247 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGGTCACCTGTTGTGCTGCCTTTGTCAGAAATGGGCCAACTACAAACATCTTGGAGATCTCTATGGTCCTTTTTACCCAGCCGAGTATGCAGCCAAGCTCCCTAAGAATCAACCTCAAGTCCGACAAACTTTGTCCCATTTTGGGCCAGCTGCCACAGGTATGACATCCATTCCAACAGAATTGCAGGTAGAAAGTTCACAGCAAAGGCCCCAGCACAGAAAACTGACATCTCATCCACGCTTCAAAAGAAGACACAAATCCAGCGAAGATTTGCCTCGAACTGTCCCAATTAACAGCAAAGCCTCCCTGCCCTTCCAGCCTCCACCCCCAAGCCTGGATGCTCTGGGCCCCATGGCTCAGCTGGCGCAGCTCCCGCTGGTGCCTCTGGACCCTGAGGAGCTGTGGGTGCACGAGAGCTGCATGGTGTGGACCAGTGGCATATACCTGGTCAATGGGAGACTCTATGGCCTTCAGGAAGCACTGGATGGTGCTAGAGATGCGAGCTGCTCTCATTGTGAGATGGCGGGCTCCACCCTCGGCTGCTACAGTAAAGGCTGCACGCTGAGGTACCACTACATTTGTGCCATAGACGCAGATTGCTCTCTTAACGAAGACAACTTTTCTTTGAGGTGTCCAAAGCACAAGGTAAGTGAACAAGGCTTTGCGTTTAACATGGAAATGTTGTTAAGATAG

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-110411-97 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TCF20 (transcription factor 20).

Ensembl:

ensembl_id ENSDART00000184388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052888 lncRNA downstream 96671 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00052887 lncRNA downstream 115048 1132906 ~ 1146553 (-) False XLOC_025940
TCONS_00052886 lncRNA downstream 233188 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052406 lncRNA downstream 288802 972541 ~ 972799 (-) True XLOC_025938
TCONS_00052885 lncRNA downstream 572733 665115 ~ 688868 (-) True XLOC_025936
TCONS_00052889 lncRNA upstream 5852 1268899 ~ 1283247 (-) True XLOC_025946
TCONS_00052407 lncRNA upstream 61910 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052408 lncRNA upstream 193095 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00050832 lncRNA upstream 251583 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052890 lncRNA upstream 323787 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00050819 mRNA downstream 29217 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050817 mRNA downstream 57260 1191370 ~ 1204341 (-) True XLOC_025943
TCONS_00050815 mRNA downstream 71469 1186540 ~ 1190132 (-) False XLOC_025942
TCONS_00050816 mRNA downstream 73874 1187045 ~ 1187727 (-) True XLOC_025942
TCONS_00050814 mRNA downstream 115104 1132908 ~ 1146497 (-) True XLOC_025940
TCONS_00050822 mRNA upstream 40815 1303862 ~ 1317290 (-) True XLOC_025947
TCONS_00050823 mRNA upstream 60685 1323732 ~ 1339220 (-) False XLOC_025948
TCONS_00050824 mRNA upstream 89508 1352555 ~ 1364946 (-) True XLOC_025949
TCONS_00050825 mRNA upstream 115051 1378098 ~ 1387292 (-) True XLOC_025950
TCONS_00050826 mRNA upstream 124388 1387435 ~ 1388936 (-) True XLOC_025951
TCONS_00050818 other downstream 54351 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050813 other downstream 539476 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 607860 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 629965 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 855991 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050829 other upstream 142457 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 599824 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 599824 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other upstream 606196 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050837 other upstream 617835 1880882 ~ 1888204 (-) True XLOC_025960

Expression Profile

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