RNA id: TCONS_00050811


Basic Information

Item Value
RNA id TCONS_00050811
length 1318
RNA type processed_transcript
GC content 0.42
exon number 5
gene id XLOC_025935
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 629707 ~ 631636 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAGTACTTTTAATGTGATGTAGAAAGCAAAGTAGGGCTTTATATCTCTGCCTGCACACAAATAAAGCAGATTCAACATGAAGGAATGGAGCTCAAATACAGTCTAGAAACATGGAGATGATGTTGGAGATCATGTGCCAAATGAAAAAGACATTTCTATAAAGCAAGACATGACAAAACTGGGCCTCAAATGAGTTGAAGAGACAAATGAAGATGATGATTGTAAGTTGTAACACAAACAGACAGTGCTGTAATTCTCCCACTGCAGTCTTCTCtttcctccacaaacacagccTATTTTCctgctctctttctttctttctttctttctctctttctctctttctttctctctttctttctttctttctAGCTGCTTTGTCCTCTTTCCAGTGCAGTAATATTCCAGCTGTGTTTGTTCTGCTCTAAATCTCTCCAATTCTCCACACTAAAGTCCTGAATCTGCGCATTTGAGGGAAACTTGTGCTCCTGAAATGCTGCAGTGATGCTGCTGTGATTTCTGCCTGTTTGTGTTGATCTTTATTCCTGAaggctctttttcttcttctgcacACATTAAGCTCTTCTGCTGACGGCGGCGTAAGTCACTGAGTCATTACCATCATCATCACTGGCTGATTTCTCCAGCTTTTTCCCAGCACAAGTGACCTCAGAATAAGTGACTGAATCCTCCGTCTGCTCATGGGCTCTGGCAGCAGGATTAATGGACATGTGGATTGTTTGATAGTGGACTTGATTCTCATCTTTGACCGCTGATTCACCGCTCGCTCTTTGATGAGCTGCTGAGGATTGAGGAGAAAACACAACAGAAAGTCTACTGGTTTCCATTACAGACAGCATTAAAAGATCCCAGAGCATCAGATTTGAGGCATTAAAAGCAGCACATTGTCCTGGTTTGTGCTGTGTTTGGCCACATTCTCCATTAGGATTGACTGCTTTTAACAGGCCACCAATAGAAGGCAGAAAATGAGGCACATGAGCAATAGAGTCTCCATTAAAAGCAATGGAATCTCCATTGTGCGCATTGTGAGCAGTAGTTTGCCATGAGCTCTTCTTCAgtggtgttttgttgtttgcTCAGGGATCAGGAATGTTGCTCTTGTTTTCTGCTCATTAAAGTCAAGTGTTTGTAATTGGAGTAAATGTGAGACTCACCAGCTCTTCTTCTGCGCTGGATCAAACACAGAACAGCAGCGATGAAAACAGCCAAAGCAGCAGCAGAAAGCAGAACTGAAAGCACTGAACAACAGAAGCACTCAGTCAGATAAAGAGCATTCAGGACTACAACACACTAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000131400

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052884 lncRNA downstream 52845 562096 ~ 576862 (-) True XLOC_025933
TCONS_00052883 lncRNA downstream 107578 506134 ~ 522129 (-) True XLOC_025931
TCONS_00052882 lncRNA downstream 187499 439917 ~ 442208 (-) True XLOC_025930
TCONS_00052881 lncRNA downstream 187550 439917 ~ 442157 (-) False XLOC_025930
TCONS_00050797 lncRNA downstream 307309 314376 ~ 322398 (-) False XLOC_025924
TCONS_00052405 lncRNA upstream 18769 650405 ~ 664380 (-) False XLOC_025932
TCONS_00052404 lncRNA upstream 18769 650405 ~ 664380 (-) False XLOC_025932
TCONS_00052885 lncRNA upstream 33479 665115 ~ 688868 (-) True XLOC_025936
TCONS_00052406 lncRNA upstream 340905 972541 ~ 972799 (-) True XLOC_025938
TCONS_00052886 lncRNA upstream 379844 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00050810 mRNA downstream 44757 580351 ~ 584950 (-) True XLOC_025934
TCONS_00050808 mRNA downstream 123466 495748 ~ 506241 (-) False XLOC_025931
TCONS_00050805 mRNA downstream 226967 383848 ~ 402740 (-) False XLOC_025928
TCONS_00050806 mRNA downstream 226993 383886 ~ 402714 (-) True XLOC_025928
TCONS_00050804 mRNA downstream 262333 364054 ~ 367374 (-) True XLOC_025927
TCONS_00050814 mRNA upstream 501272 1132908 ~ 1146497 (-) True XLOC_025940
TCONS_00050815 mRNA upstream 554904 1186540 ~ 1190132 (-) False XLOC_025942
TCONS_00050816 mRNA upstream 555409 1187045 ~ 1187727 (-) True XLOC_025942
TCONS_00050817 mRNA upstream 559734 1191370 ~ 1204341 (-) True XLOC_025943
TCONS_00050819 mRNA upstream 596496 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050807 other downstream 224097 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050799 other downstream 284770 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050812 other upstream 18793 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050813 other upstream 88586 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050818 other upstream 575462 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050829 other upstream 773868 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 1231235 1862871 ~ 1869899 (-) False XLOC_025959

Expression Profile

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