RNA id: TCONS_00050797


Basic Information

Item Value
RNA id TCONS_00050797
length 1204
lncRNA type lincRNA
GC content 0.49
exon number 4
gene id XLOC_025924
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 314376 ~ 322398 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCGCGGGAGCGCGCATTGCGTCACCGAGCGCGTGCATGCGGATGGTCTCCATCATCAGAGGGGATTAGTAGTTTTCCGTTATTGACGGTTTAATGAGCTTTACATCGGCGACAAAACTCGGAGATTAACTGTGTGATTATCTGAGAAATTCCGGTGGAGTCTGTCTGAGTTCATCCGAGCTCGAGTCTGACGTGATGTCAGTGCAGTGATGGCTCCGCCCCAAAGGAGGCGTTCCTTTGGCCCCGTCTCACCCAAATACATCTACAGGAGCCTGTCACTTAAATTGAGGGGCGGGGCTTCCCAATGTGAGGCGGAGCATACTGATTGGAGGAGGAGGCTGAGTAAAGGACAAGCTGATttctGGAGTCTGTGGGATGCACTGGAGAATGAAGACACACTCGGCGTCCAGCATCTGCTGTCCAGAGAACAAgcgacggacacacacacacaccgacgaGTGAACCGGGTGACTGAACTTGGCCTGGTGCCGCTGGATGTGGCTCTTCTTACCCAGAATGCCTCACTGCTGAAGGTGCTGCTGAAGGCCGGAGCCAAACACAACCCTACCTTGATCTCGGCCTCTGATTGGTCGCTGAAGCTGGATGAGCTGGTGTCATTGGCTGAGCAGAAGCTGGAGGAGTGGAGGGCGGAGCTTGAGGTCAGAGAGAAGGCGGAGCTTCAGGTGAGAGTGAGGGCGGAGCTtcagacacacacagacgcacagaAGAACGTGGAGCAGTGGAGACGCCGCCGAGAGCTTTACCAGAACATGAGGGAGAGATTCAACAGGACgagtatgaacacacacacacacgtacactgaaacatttaaaacaaacacacactcactaaaacatttaaaacaagcacacacacacactcactgaaacttttaaaacaaacacacactgaaacatttaaaacaaacacacacacacacacacacacacacactgaaacatttaaaacaaacacacacacacacacgcactgaaacatttaaaacaaacacatacatacacacacacacacactgaaacatttaaaacacacacacacacacacacactcactgaaacatttaaaacaaacacacacatacacacacacacacactgaaacatttaaaacaaacacacacatacacacacacacactgaaacatttaaaacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194533

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052400 lncRNA downstream 13749 292774 ~ 300627 (-) True XLOC_025923
TCONS_00052399 lncRNA downstream 21763 284300 ~ 292613 (-) True XLOC_025922
TCONS_00052880 lncRNA downstream 38911 269052 ~ 275465 (-) True XLOC_025921
TCONS_00052881 lncRNA upstream 117519 439917 ~ 442157 (-) False XLOC_025930
TCONS_00052882 lncRNA upstream 117519 439917 ~ 442208 (-) True XLOC_025930
TCONS_00052883 lncRNA upstream 183736 506134 ~ 522129 (-) True XLOC_025931
TCONS_00052403 lncRNA upstream 227818 550216 ~ 697367 (-) False XLOC_025932
TCONS_00052884 lncRNA upstream 239698 562096 ~ 576862 (-) True XLOC_025933
TCONS_00050796 mRNA downstream 99667 196316 ~ 214709 (-) True XLOC_025920
TCONS_00050795 mRNA downstream 133516 162315 ~ 180860 (-) False XLOC_025919
TCONS_00050794 mRNA downstream 133516 162315 ~ 180860 (-) True XLOC_025919
TCONS_00050793 mRNA downstream 167008 146153 ~ 147368 (-) True XLOC_025918
TCONS_00050792 mRNA downstream 243594 66845 ~ 70782 (-) True XLOC_025917
TCONS_00050798 mRNA upstream 3359 325757 ~ 336299 (-) True XLOC_025925
TCONS_00050800 mRNA upstream 24132 346530 ~ 367405 (-) False XLOC_025927
TCONS_00050802 mRNA upstream 30833 353231 ~ 367283 (-) False XLOC_025927
TCONS_00050801 mRNA upstream 30833 353231 ~ 367283 (-) False XLOC_025927
TCONS_00050803 mRNA upstream 41217 363615 ~ 367283 (-) False XLOC_025927
TCONS_00050799 other upstream 22419 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050807 other upstream 80488 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050811 other upstream 307309 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050812 other upstream 328031 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050813 other upstream 397824 720222 ~ 722125 (-) True XLOC_025937

Expression Profile

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