RNA id: TCONS_00050804


Basic Information

Item Value
RNA id TCONS_00050804
length 737
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_025927
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 346530 ~ 367405 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATCCGCTATTTTCCGCTGCTttcctgttgttttgtttttgcgtcGAAAAGCAGAACCtccaggcaaacacacacactttctttcaGTCATGATGTCAGGAGGAGTCGCGAGCGGGATCTGTGCTCTGCTCTGTGTGTTTCTGCTGTGTGGGGACTTGCCGTCAGCTCAGGGCGAGAAGCACTCTCTGTATTACATCTACACGAGTTTGTCCAAACCTCTGGATCTGCCGGGCATCTATGAGTTCTCTGCTATGGGTCTGTTAGATGACAGACAGATTGACTCTTATAACAGCGAAGAGCAGAGAAAGATTCCCAAACAGCAGTGGATGAAGGAGAAAATGCAGGAGGATTACTGGGAGAAAGGCACTTGGTCGAGAAAGAGCAAAGAACAGTGGTTTAATGTGAACGTCCACATACTGATGGAGCGCATGAGACACAATATGTCAGATCTTCACATTCTTCAGTGGAGACACGGCTGTGAAGTGGAAATACAAGGAAGTGAAGTGAAGTTTTCCAAAGGCGTTAGCGAGTATGGCTATGATGGAGAAAACCTCCTGTATTTTGATGATGCAGAGTCTCGGTGGGTCGCCCCAGTTGAAGAAGCGCTGCCAACCAAGAGAAAATGGGACAATATACCCATCCTGAACCAATACACCAAAGGCTACCTGGAGAAAGAGTGTGTGGACTGGCTCAACAAATTCAGAGAGTATGCAGATGAAGAGCTCAGAAAAGCCT

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030916-1 Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space.

Ensembl:

ensembl_id ENSDART00000135595

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050797 lncRNA downstream 41656 314376 ~ 322398 (-) False XLOC_025924
TCONS_00052401 lncRNA downstream 48248 314733 ~ 315806 (-) False XLOC_025924
TCONS_00052402 lncRNA downstream 48248 315141 ~ 315806 (-) True XLOC_025924
TCONS_00052400 lncRNA downstream 63427 292774 ~ 300627 (-) True XLOC_025923
TCONS_00052399 lncRNA downstream 71441 284300 ~ 292613 (-) True XLOC_025922
TCONS_00052881 lncRNA upstream 72543 439917 ~ 442157 (-) False XLOC_025930
TCONS_00052882 lncRNA upstream 72543 439917 ~ 442208 (-) True XLOC_025930
TCONS_00052883 lncRNA upstream 138760 506134 ~ 522129 (-) True XLOC_025931
TCONS_00052403 lncRNA upstream 182842 550216 ~ 697367 (-) False XLOC_025932
TCONS_00052884 lncRNA upstream 194722 562096 ~ 576862 (-) True XLOC_025933
TCONS_00050798 mRNA downstream 27755 325757 ~ 336299 (-) True XLOC_025925
TCONS_00050796 mRNA downstream 149345 196316 ~ 214709 (-) True XLOC_025920
TCONS_00050795 mRNA downstream 183194 162315 ~ 180860 (-) False XLOC_025919
TCONS_00050794 mRNA downstream 183194 162315 ~ 180860 (-) True XLOC_025919
TCONS_00050793 mRNA downstream 216686 146153 ~ 147368 (-) True XLOC_025918
TCONS_00050805 mRNA upstream 16474 383848 ~ 402740 (-) False XLOC_025928
TCONS_00050806 mRNA upstream 16512 383886 ~ 402714 (-) True XLOC_025928
TCONS_00050808 mRNA upstream 128374 495748 ~ 506241 (-) False XLOC_025931
TCONS_00050809 mRNA upstream 194959 562333 ~ 697363 (-) False XLOC_025932
TCONS_00050810 mRNA upstream 212977 580351 ~ 584950 (-) True XLOC_025934
TCONS_00050799 other downstream 19117 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050807 other upstream 35512 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050811 other upstream 262333 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050812 other upstream 283055 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050813 other upstream 352848 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050818 other upstream 839724 1207098 ~ 1207250 (-) True XLOC_025944

Expression Profile

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