RNA id: TCONS_00050838


Basic Information

Item Value
RNA id TCONS_00050838
length 922
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_025961
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1895523 ~ 1906976 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCATCTGAAGCTCAGCAGTGGGATTTGCTGTTTCACGGGTGTTGCAACTCAGCTCAGCTAATAACAGAAACTAACAAAAACAATGTCTTACAGAGAAACAGACGGTGTGCATTGCAGAAAAGCTCAGCCTTCACATGAAGCAGCTGAAATGCATGTAGGAACTCAGAGGCAAAACAATGGCAACATTAATATCGTCCTCCTGGGGAAAACCGGAGTTGGGAAAAGCTCATCAGGAAACACCATACTGGGAGAAAACAGATTCACAAGTGGAAGAAGCCTGTCTCCTGTCACAGATACATCCAGCAGTGTGAAATCAGTCATTAATGGCAGATCTGTGTCCGTCATCGACACTCCTGGGTTCTTTTCTACTAATCTTCCAAAAAAGCAGCTGGCGAAGGAGTTAGCGAGGAGTGTTCATCTCTCTGCTTCAGGAGTTCATGCTTTCCTATTTGTTGTGCCGTACGGCAGGTTCACAGAGCAGGAGGAGGACATACTGAATAAAGTGGAAAAGGTTTATGGTAAAGATGTGCTGAAGCATGTGATAATCCTCTTCACATACGGGGATGAATGTAACAAAGAGAAAATTCAGAAAGAGATAGCTGGAAATGATTTTGTCAGTAGAGTTGCAGAGAGATGTCATGATTATCATGTCTTCAATAACAGAGATCTGGATGACAGACAGCAGGTCAGTGATCTACTGAAGAAGATTGACTCAATGGTAGAGTTTAATCAAGGGTGCTACACTAATGAGATGTACGAATGGGCACAGAAGACCACATTTGAACGCTTCTGGAAAATTCTCAAAGAGCTCTTTTATgctatttatgatttttttcagaGCCTGTCTAATACATTTGATATTAGCTCTTGGATAACAAAAATGGAACTATACATGAGAATTTCTGCACAATCAAAATAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-148 Predicted to enable GTP binding activity.

Ensembl:

ensembl_id ENSDART00000180953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052891 lncRNA downstream 178550 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052890 lncRNA downstream 210345 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00050832 lncRNA downstream 374905 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052408 lncRNA downstream 405366 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00052407 lncRNA downstream 562764 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052892 lncRNA upstream 106348 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00052409 lncRNA upstream 220668 2127644 ~ 2131830 (-) False XLOC_025969
TCONS_00052410 lncRNA upstream 221419 2128395 ~ 2130490 (-) False XLOC_025969
TCONS_00052411 lncRNA upstream 221562 2128538 ~ 2130543 (-) True XLOC_025969
TCONS_00052893 lncRNA upstream 419228 2326204 ~ 2335791 (-) False XLOC_025971
TCONS_00050833 mRNA downstream 36325 1842616 ~ 1859198 (-) True XLOC_025958
TCONS_00050831 mRNA downstream 374866 1511199 ~ 1520657 (-) False XLOC_025955
TCONS_00050830 mRNA downstream 461388 1414870 ~ 1434135 (-) True XLOC_025953
TCONS_00050828 mRNA downstream 487036 1405504 ~ 1408487 (-) False XLOC_025953
TCONS_00050827 mRNA downstream 495214 1395079 ~ 1400309 (-) True XLOC_025952
TCONS_00050839 mRNA upstream 23090 1930066 ~ 1963126 (-) False XLOC_025962
TCONS_00050840 mRNA upstream 24839 1931815 ~ 1938665 (-) False XLOC_025962
TCONS_00050841 mRNA upstream 24946 1931922 ~ 1938588 (-) False XLOC_025962
TCONS_00050842 mRNA upstream 52725 1959701 ~ 1970820 (-) True XLOC_025962
TCONS_00050843 mRNA upstream 72295 1979271 ~ 1989000 (-) True XLOC_025963
TCONS_00050837 other downstream 7319 1880882 ~ 1888204 (-) True XLOC_025960
TCONS_00050835 other downstream 19552 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other downstream 19671 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050834 other downstream 25624 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050829 other downstream 461618 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050849 other upstream 206391 2113367 ~ 2113483 (-) True XLOC_025968
TCONS_00050851 other upstream 422732 2329708 ~ 2333171 (-) False XLOC_025971
TCONS_00050852 other upstream 422737 2329713 ~ 2335791 (-) True XLOC_025971
TCONS_00050861 other upstream 1274229 3181205 ~ 3185593 (-) False XLOC_025983
TCONS_00050862 other upstream 1274874 3181850 ~ 3185546 (-) False XLOC_025983

Expression Profile

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