G708437


Basic Information

Item Value
gene id G708437
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41330406 ~ 41353697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU805551
ggacaagacaggacaaggcagggcaggacaagacaagacaagacaggagaggacaagccaagacaggacaagacagggcaggacaagacaagacaggacaagacagggcaggacaagacagggcaggacaagacaggacaagacagggcaggacaggacaagacaggacaagacaagacaagacaaggcaggacaagacaagacaggacaagacagggcagggcaagacagggcaggacaagacaggacaagacagggcaggacaagacaggacagggcaagacaaggcagggcaggacaagacaggacaggacaggacaggacaggacaggacaagacaagacaa
>TU805550
ggacaagacagggcaggacaagacaggacagggcaggacaagacagggcaggacaagacagggcaggacaggacaagacaggacaagacaagacaagacaaggcaggacaagacaagacaggacaagacagggcagggcaagacagggcaggacaagacaggacaagacagggcaggacaagacaggacagggcaagacaaggcagggcaggacaagacaggacaagacaggacaagacaggacaagaca
>TU805548
gcagggcagggcagggcagggcaagacaagacaatacaagataaaacaggacaggacaggacaggacaatacaagacaagacaagacaagacaggacaggacaggacagggcagggcagggcagggcaagacaggacaggacaggacaagacagggcaggacaagacaagacagaacaagacagggcaggacaagacaagacaggacaagacagggcaggacaagacagggcaggacaagacagggcaggacaagacaagacagggcaggacaagacaagacaggacagggcgggacaagacaagacagggcaggacaagacaagacaagagaagacaagacaggacaaggcaaggcaaggca

Function

NR:

description
protein GPR108

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU805551 False 346 lncRNA 0.55 4 41330406 41339701
TU805550 False 250 lncRNA 0.56 2 41338077 41341336
TU805548 True 363 lncRNA 0.55 2 41339352 41353697

Neighbor

gene id symbol gene type direction distance location
LOC110529916 LOC106571797 coding downstream 360928 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 530369 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 550775 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 660905 40638271 ~ 40669501 (-)
LOC118965516 LOC106588149 coding downstream 1185213 40143911 ~ 40145193 (-)
LOC118965611 NA coding upstream 371824 41725469 ~ 41728987 (-)
klhl18 klhl18 coding upstream 986985 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 1078094 42431791 ~ 42526586 (-)
mycb myc coding upstream 2246057 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 2405632 43759329 ~ 43763318 (-)
G708422 NA non-coding downstream 10623 41319120 ~ 41319783 (-)
G708412 NA non-coding downstream 22237 41307647 ~ 41308169 (-)
G708410 NA non-coding downstream 25721 41304439 ~ 41304685 (-)
G708409 NA non-coding downstream 26113 41303746 ~ 41304293 (-)
G708406 NA non-coding downstream 28513 41301665 ~ 41301893 (-)
G708449 NA non-coding upstream 6756 41360453 ~ 41362488 (-)
G708451 NA non-coding upstream 7973 41361670 ~ 41383602 (-)
G708452 NA non-coding upstream 9761 41363458 ~ 41376326 (-)
G708453 NA non-coding upstream 22293 41375990 ~ 41383342 (-)
G708458 NA non-coding upstream 38374 41392071 ~ 41392482 (-)
slc22a16 LOC106571810 other downstream 1370793 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 2104093 39219644 ~ 39226313 (-)
G704874 NA other downstream 3016603 38313489 ~ 38313803 (-)
G704702 NA other downstream 3292060 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 3838249 37474229 ~ 37626960 (-)
G709272 NA other upstream 1366074 42719771 ~ 42720699 (-)
G709454 NA other upstream 1817063 43170760 ~ 43171082 (-)
G711133 NA other upstream 3185096 44538793 ~ 44539504 (-)
G712814 NA other upstream 4104080 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 4957433 46309732 ~ 46325685 (-)

Expression


Co-expression Network