G708653


Basic Information

Item Value
gene id G708653
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41402045 ~ 41661627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU805857
gaacactgctttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatgcatttaacatattacagcttaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtccccttcaaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagactggtagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccggtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaagcacatatacctgcacacatactggacagtaggtggcaatggtactgtacactgattgtatatggggtgcaacaaacttacctgagactccctgtctctgccagtctgtccctgcatatctgtccccagttctgctgtctgtgtgcagtctgccctagcaggggctaaaatctgatatcaactttgaaggggacaattacatgacattttctcaagcgcaattcctgaaaaaacaccaaaagtagtgctgtaacacatagcctaagctgtaatatgttaaatgtatattgaggaaccataatcactactactggataattgataggtacagtagtgaactgaagggttgtcccaacttgttcaaatcattataatactactactaataatagttaaagcagtgttccttatcagtccagtatgtgtgcaggtatatgtactttacaaccagcctttcttgttattgctggttgtagtacatatacctgcatacatactggacagtaggtggcaatggtactgtacactgactgtatatggggtgcaacaaacttacctgagactccctgtctctgccagtctgtccctgcatatctgtccccagttctgctgtctgtgtgccatctgccctagcaggggctaaaatctgatatcaacttagaaggggacaattacatgacattttctcaagagcaattcctgaaaaaacaccaaaagtagtgctgtaacacatagcctacgctgtaatatgtaaaatgtatattgaggaaccataatcactactactggataattgataggtacagtagttaactgatgggttgtcccaacttgttcaaatcattataatactactactaataatagttaaagcagtgttccttatcagtccagtatgtatgcaggtatatgtgctacatacaaccagcctttcttggtattgctggttgtagtacatatacctgcatacatactggacagtaggtggcaatggtactgtaaactaactgtatatggggtgcaacaaacttacctgagactccctgtctctgccagtctgtccctgcatatctgtccccagttctgctgtctgtgtaccatctgccctagcaggggctaaaatcggatatcaactttggaggggacaattacatgacattttctcaagagcaattcctgaaaaaacaccaaaagtagtgctgtaacacatagcctacgctgtaatatgttaaatgtatattgaggaaccataatcactactactggataattgataggtacagtagttaactgaagggttgtcccaacttgttcaaatcattataatactactactaataatagttaaagcagtgttccttatcagtccagtatgtgtgcaggtat
>TU805856
tgagaaaatgtcatgtaattgtccccttcaaagttgatatccgattttagcccctgccagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagtcagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaagcacatatacctgcacacatactggactgataaggaacactgctttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttaacctttctgatctccccatcccggatccgggatcgtgaatacagactcaagctcattactataacgcaacattaactattcatgaaaatcgcaaatgaaatgaactaaatatgccatctctgaagcttagccttttgtaaacaacactgtcaactcagattttcaaaatatgcttctcaaccataggaaaacaataatttgtgtaaaagtagctagctagcgtagcatttagcgttagcatccagcacgcaacatttcaacaaaaacataaaagccttcaaataaaataatttacctttgaagaacttcagatgttttcaatgaggagactctcagttagatagcagatgctcagtttttccaaaaagattctttgtgtattagaaatagctccgttttgtacatcacatttggctaccaaaaaaacccgaaaattcagtcctcaaaacgcaaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcctcaaggtgtttttcacatatctcttcgatgatatatcgttcgtggaagcatggtttcccctctcaatcaaatggaaaaatacttgcac
>TU805851
tccaagtgtccgcctggtgtcctgcgtcgaaactggtgcgcaaagccatgtgcaagtatttttccatttgattgagaggggaaaccatgcttccacgaacgatatatcatcgaagagatatgtgaaaaacaccttgaggattgattctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaattttcgggtttttttggtagccaaatgtgatgtacaaaacggagctatttctaatacacaaagaatctttttggaaaaactgagcatctgctatctaactgagagtctcctcattgaaaacatctgaagttcttcaaaggtaaattatgttatttgaaggcttttatgtttttgttgaaatgttgcgtgctggatgctaatgctaacgctaaatgctacgctagctagctacttttacacaaattattgttttcctatggttgagaagcatattttgaaaatctgagttgacagtgttgtttacaaaaggctaagcttcagagatggcatatttagttcatttcatttgcgattttcatgaatagttaacgttgcgttatggtaatgagcttgagtctgtattcacgatcccggatccgggatggggagatcagaaaggttaactgaagggttgtcccaacttgttcaaatcattataatactactactaataatagttaaagcagtgttccttatcagtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtatgtagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttaactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtccccttcaaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccggtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaagcacatatacctgcatacatactggactgataaggaacactgctttaactattataagtagtagtattataatgatttgaacaagttgggacaacccttcagttaactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccttctaagttgatatccgattttagcccctgctagggcagatggcacacagagagcagaactggggacagatatgcagggacagactggcagagtcagggagtctcaggtaagtttgtttgccatccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgccggtatatgtactacaaccagcaataccaagaaaggctggttgtatgtagcacatatacctgcatacatactggactgata
>TU805850
tccaagtgtccgcctggtgtcctgcgtcgaaactggtgcgcaaagccatgtgcaagtatttttccatttgattgagaggggaaaccatgcttccacgaacgatatatcatcgaagagatatgtgaaaaacaccttgaggattgattctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaattttcgggtttttttggtagccaaatgtgatgtacaaaacggagctatttctaatacacaaagaatctttttggaaaaactgagcatctgctatctaactgagagtctcctcattgaaaacatctgaagttcttcaaaggtaaattatgttatttgaaggcttttatgtttttgttgaaatgttgcgtgctggatgctaatgctaacgctaaatgctacgctagctagctacttttacacaaattattgttttcctatggttgagaagcatattttgaaaatctgagttgacagtgttgtttacaaaaggctaagcttcagagatggcatatttagttcatttcatttgcgattttcatgaatagttaacgttgcgttatggtaatgagcttgagtctgtattcacgatcccggatccgggatggggagatcagaaaggttaactgaagggttgtcccaacttgttcaaatcattataatactactactaataatagttaaagcagtgttccttatcagtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtatgtagcacatatacctgcatacatactggactgataaggaacactgctttaactattattagtag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU805857 False 1812 lncRNA 0.40 6 41402045 41661627
TU805856 False 960 lncRNA 0.39 2 41463107 41564593
TU805851 False 1789 lncRNA 0.39 4 41466487 41607423
TU805850 True 865 lncRNA 0.37 2 41606084 41607423

Neighbor

gene id symbol gene type direction distance location
LOC110529916 LOC106571797 coding downstream 432567 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 602008 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 622414 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 732544 40638271 ~ 40669501 (-)
LOC118965516 LOC106588149 coding downstream 1256852 40143911 ~ 40145193 (-)
LOC118965611 NA coding upstream 63894 41725469 ~ 41728987 (-)
klhl18 klhl18 coding upstream 679055 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 770164 42431791 ~ 42526586 (-)
mycb myc coding upstream 1938127 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 2097702 43759329 ~ 43763318 (-)
G708652 NA non-coding downstream 5832 41394936 ~ 41396213 (-)
G708460 NA non-coding downstream 8614 41393002 ~ 41393431 (-)
G708458 NA non-coding downstream 9563 41392071 ~ 41392482 (-)
G708451 NA non-coding downstream 18443 41361670 ~ 41383602 (-)
G708715 NA non-coding upstream 15150 41676777 ~ 41680717 (-)
G708716 NA non-coding upstream 16559 41678186 ~ 41681998 (-)
G708729 NA non-coding upstream 44077 41705704 ~ 41722567 (-)
G708738 NA non-coding upstream 92818 41754445 ~ 41762538 (-)
slc22a16 LOC106571810 other downstream 1442432 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 2175732 39219644 ~ 39226313 (-)
G704874 NA other downstream 3088242 38313489 ~ 38313803 (-)
G704702 NA other downstream 3363699 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 3909888 37474229 ~ 37626960 (-)
G709272 NA other upstream 1058144 42719771 ~ 42720699 (-)
G709454 NA other upstream 1509133 43170760 ~ 43171082 (-)
G711133 NA other upstream 2877166 44538793 ~ 44539504 (-)
G712814 NA other upstream 3796150 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 4649503 46309732 ~ 46325685 (-)

Expression


Co-expression Network