G708735


Basic Information

Item Value
gene id G708735
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41976502 ~ 42002078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU805957
atacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattagcctccagcctgtctcagcctccagtatttatgctgcagtagtttgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgacctgagccataggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccgccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttatgtacagcactttgagatatcagccgatgtacgaagggctatataaaataaatttgattgatttgattgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttaggtttttcctttcctttaacaaaacaataaaaccatttcatgttcatatttaacaacactatggttgaatgaatctctcaccacatcgacttctgcactgccacccagaaaaagagggaacttggaacttacctcagtttaatttatgatcctaggaggacatctacgggcctttttaagtactacacctattatattCGATCAGAAAcgggagggataaacaggagataggcctgtgcaccttaaaactaaccagttgaaacgaaacacaattatattcaaaacctaaccccaaccctcgtaaccctaaccctggatcaacagactcaaaactagaaacctaaccagttgaaacaaaacacaattatattcaaaacttaaccctaacccccgtATCCCTAACACCCGTAACCctagatcaacagactcaaaactagaaacctaacccttaaccctaacccctaacccccctaaccctaaacctaacctctaacccaaacactggagcagttacaccaacttcggaggacacacatcactggaaacaacaacaaaaaatccggaCCCGttatctcccattccccaagtggacgaaaacatggcaaaaaatctaccgcatacacaggatcccaaatggacaaa
>TU805955
CACTCTCACCCGTATCTGAACCCTCCACACCACAACCTGTTACCGGCTATCCTACCTAGTAACAGTACAGACCAATCAAAATAACCTAAGCCACCTggcccacacatgcacacaccagaGAGGTAGCACTCCTCACAACTTTACAGGGAGACCACTGGACAGGCAGCATTTCGCTCCACACACCCAACCAGGACTACATTCAAGCTGAgtaaggcagaaacgcgtcgtggctgggaCTCCTCTAGATCTGTAGTGTTGCTGTAAGGAAGGCAGGTTCCACACAGACGTCGGAGGAGTCTCCTTTTGGCTACTATTTTAATTGTACACTCTTCTTTCCTTAATTGGATTTTTACACAGCTCtcatatatatatgcacacactaGGATGTAGTGGAGTGTGACGTTGTATGCTATCCCTCACACCACTTGTGGGGTTGTATGTGTATGCTTTTGTATATGTAAAAAATATGTGTATAGGCACATCCCCTTTTATGTTCATGTGCGTATGCATGTGTACCCCCACCCCATCCTTGGTCCCAAccctactgacagacagacaccaatACTTAGCCATAGGGCCTTTTTACCAGTAGGCTCCCCTAAAAATATAAAAGGTGGCCATTAGGACCGTAAAATAGATCTTTTATAGTATTCCAGAGCTACAATGACTACGGACTCTTAAAAATGTACTTTATATTTATCCTTATTGATCCCTTGGATCCTGTAACAATAATCACTAGGGAACCAATTTATATTTAACAAAATATCACATTTTCTCCTCTtggggttaccatgaccatggagccTTGACCAATAGGAAACAActaaatttaaaaataaaagaatacaataaaaataaaataaaaaatgaatacatatgtacataaatatatatattaattttattttttaaagtctcttgaactcagggttaccatgaccatggacccttgatgaaaagaaacaataaaatagaACACAAATAGACCAAATTTAACAAAAAAACCTTCACCAACCCACCATCCTTCTAAAACAATTGTTTGAAgatacccaccagcacccccaacggacgagaaccttttttctccaactactctggggacctcgaccttggcgactcccccgcagcgattACACCCTAAACAATTAGGCCCttccatacaccaagcaagaagataggaggatatggatagaccggactccttcgggacctcTCGGGGTTCTGTTGGCAGACCAAGCGGCTCAACCCTCCCAGCCCCACAAAAACAGGAGACTCGCGTACCGCGCTGGACGACCAGTTTAGAAttggcagtatgttcagtagCGCGTGTTTCATCCTAGCGGGTTGGGGCAGTTAAGTCCTCGAAAAGTGGGGCTTTTGGGTcaggcgctgcggctggaggactcgcattggccatgtaatccctggggtgcccagataatgtctggcggagaATTGGATCCCACAGAATAATTTCTTACTGGGGGATCCCTTACCCCGCCGCACTAAGCCTGGACAACCTAACCACTTTTTTACCTagactacaaaaaaaaaaatctgtcttgGGTTGACATACCACTGGAACactacgatcctggaagggagtagcTCCACGGGTCACTATCGCCCAAACCACTGAATTACCTACGACTGAGATGGTTGGTATGGACACATGGCAATCAACTTCTACTACTGGCAGACGTACGATACGAAAACCAGAGAAGATTTGCCTgatcctaaaccctccatacacctaccgaaacacaggacggaactctaagggcggatgcatgacaaccatagagagggctcgccttctgggtttttgtctgctcaaaccacttgtAGTTTAAAGActaaccacttgacagggacacatggcaaccaactgaggtccggacctgcacaaggtaagCAACTCAATGCTTTTGCCTGaacctacgccgagtatacccatacagaccagctggattcgactagacagGTGTTAATTCAgagttaggatcctggaagggaataactcctaattacacacatgattgaaaacatccaggaccaaaagactgacgaacacggaAGTAAATTCATAGACAACGTGGAGCTAAAAAAGGATCCGACAGAGtgtaaactcctaggttgcactatgctttccacttccgttgacaagcagacctagacatcatgaccataccactcgacatggacacatggcaaccaaccgaggaccggacctgcataaggtacgcaacacaagggttttgcctgatcctacgtcgagttgacagacctacctaaccctaaaccttaccctaaccctaaccctaagcttaactattctaaaaaaaaaaaaaactataccaTACCtaaacctacagacagacagtctttaaacccaaccaacgagttaatctacaagtgggcaaccatggggcctactactttggccggccgcgcccggac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU805957 False 1717 lncRNA 0.43 2 41976502 41992943
TU805955 True 2460 lncRNA 0.45 2 41999506 42002078

Neighbor

gene id symbol gene type direction distance location
LOC118965611 NA coding downstream 247515 41725469 ~ 41728987 (-)
LOC110529916 LOC106571797 coding downstream 1007024 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 1176465 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 1196871 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 1307001 40638271 ~ 40669501 (-)
klhl18 klhl18 coding upstream 338604 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 429713 42431791 ~ 42526586 (-)
mycb myc coding upstream 1597676 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 1757251 43759329 ~ 43763318 (-)
efr3a efr3a coding upstream 2182915 44184993 ~ 44436559 (-)
G708775 NA non-coding downstream 1439 41968838 ~ 41975063 (-)
G708769 NA non-coding downstream 34046 41932539 ~ 41942456 (-)
G708762 NA non-coding downstream 44981 41883351 ~ 41931521 (-)
G708764 NA non-coding downstream 46550 41911585 ~ 41929952 (-)
G708761 NA non-coding downstream 92076 41870434 ~ 41884426 (-)
G708796 NA non-coding upstream 113660 42115738 ~ 42126720 (-)
G708804 NA non-coding upstream 138879 42140957 ~ 42174826 (-)
G708810 NA non-coding upstream 172197 42174275 ~ 42181867 (-)
G708820 NA non-coding upstream 214266 42216344 ~ 42218498 (-)
G708827 NA non-coding upstream 244885 42246963 ~ 42310645 (-)
slc22a16 LOC106571810 other downstream 2016889 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 2750189 39219644 ~ 39226313 (-)
G704874 NA other downstream 3662699 38313489 ~ 38313803 (-)
G704702 NA other downstream 3938156 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 4484345 37474229 ~ 37626960 (-)
G709272 NA other upstream 717693 42719771 ~ 42720699 (-)
G709454 NA other upstream 1168682 43170760 ~ 43171082 (-)
G711133 NA other upstream 2536715 44538793 ~ 44539504 (-)
G712814 NA other upstream 3455699 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 4309052 46309732 ~ 46325685 (-)

Expression


Co-expression Network