G708762


Basic Information

Item Value
gene id G708762
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41883351 ~ 41931521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU806008
gggagtctcaggtaagtttgttgcaccccatatacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttaagcacatatacctgcacacatactggactgataaggaacactgctttaactattataagtagggacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccctccaaagttgataacagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactctccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattactgtccagtatgtatgcagGTAtgtgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataacaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgttTTTAATTttgattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgtttgaTTTGAACAagtatgtactacaaccagcaaaaccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaagagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgt
>TU806006
cttgagaaaatgtcatgtaattgtcccctccaaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgtaggtatatgtactacaaccagcaataccaagaaaggctggttgtaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaagcacatatacctgcatacatactggactgataaggagcactgcttttagtagtagtattataatgatttgaacaagttttgacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgtttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccttctaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgtaggtatatgtactacaaccagcaataccaagaaaggctggttaagcacatatacctgcacacatactggactgataaggaacactgctttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataacaagaaaggctggttgtaaagcacatatacctgcatacatactggacagtaataatagttaaaagcagtgttccttatcagtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaagtctcaggtaagtttgtttgccatccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatacaggtatatgtactacaaccagcaataccaagaaaggctggttgtaatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaaagcacatatacctgcacacataaggagcactgcttttaactattattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU806008 False 1469 lncRNA 0.39 2 41883351 41924199
TU806006 True 1554 lncRNA 0.40 2 41922915 41931521

Neighbor

gene id symbol gene type direction distance location
LOC118965611 NA coding downstream 154364 41725469 ~ 41728987 (-)
LOC110529916 LOC106571797 coding downstream 913873 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 1083314 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 1103720 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 1213850 40638271 ~ 40669501 (-)
klhl18 klhl18 coding upstream 409161 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 500270 42431791 ~ 42526586 (-)
mycb myc coding upstream 1668233 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 1827808 43759329 ~ 43763318 (-)
efr3a efr3a coding upstream 2253472 44184993 ~ 44436559 (-)
G708758 NA non-coding downstream 16069 41850901 ~ 41867282 (-)
G708745 NA non-coding downstream 119928 41756991 ~ 41763423 (-)
G708738 NA non-coding downstream 120813 41754445 ~ 41762538 (-)
G708729 NA non-coding downstream 160784 41705704 ~ 41722567 (-)
G708769 NA non-coding upstream 1018 41932539 ~ 41942456 (-)
G708775 NA non-coding upstream 37317 41968838 ~ 41975063 (-)
G708736 NA non-coding upstream 42560 41974081 ~ 42291085 (-)
G708735 NA non-coding upstream 44981 41976502 ~ 42002078 (-)
G708737 NA non-coding upstream 53150 41984671 ~ 41990975 (-)
slc22a16 LOC106571810 other downstream 1923738 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 2657038 39219644 ~ 39226313 (-)
G704874 NA other downstream 3569548 38313489 ~ 38313803 (-)
G704702 NA other downstream 3845005 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 4391194 37474229 ~ 37626960 (-)
G709272 NA other upstream 788250 42719771 ~ 42720699 (-)
G709454 NA other upstream 1239239 43170760 ~ 43171082 (-)
G711133 NA other upstream 2607272 44538793 ~ 44539504 (-)
G712814 NA other upstream 3526256 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 4379609 46309732 ~ 46325685 (-)

Expression


Co-expression Network