XLOC_026330 (baiap2l2a)


Basic Information

Item Value
gene id XLOC_026330
gene name baiap2l2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24437363 ~ 24458281 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051344
GACGGGAAGGAGAGGGTCATCTGTCAGTCTGCTTGCTTGCTTGTTGTTTAGTCTGTggatgttgtttatttgtttgttgtgccACAGTGACAGATCAAGATGTCAGGACAAAACAGTGATCAACTGCATCGCACCACTCTGGGCATTTATACGAGCATAATAGAGCAGTTCAACCCGAGCCTGCAAAGACTGGTGTCACTGGGAAACAGCTACATTCAGGCTTTCCAAGCACTTGCTGCCACCAGCGAGGCCTATTTCGATGCTCTGTCTAAGATGGGTGAACAGGCCATGCTGAGCAGGTCCTCACGTTTACTGGGTGATGTGTTGATACAGATGTCAGACAGTCAGAGGAGACTCACCAACGAGCTGGAGGGAGTGTTTCGCTGGTTCCACTCGGAGGTCCTTCAAGAGATGGACAACAATGTCAGATTGGATAAAGATTACATATCGACCAGCAGGAGGAGATATGAGATGGAGGTGAGAAACCAGGCAACAGCACTGGAGAGACAGATGAGGCGAGGAGTACCGCAGgaTGGCAGTGAATATGTGCACTTTCTCAAGGAGTGTCAGAAGGAGGCGTTAAAGGAGGAGGAAAGGCGATATCGATTCCTGGCGGAAAAACACTGTGGGCTGACTCAGTCTATTGCTCATCTCATGAACAAGACAGGGGGCAGCCTGCAAAACAGAGCAGAGGGGTGGAAAGATCTGGTGGATCACACAAGAGAATCCCGTTCACGCACTCCTTCACGGCTGGAGGACAACATTCCTGATGTTAACCGCTGGGCAGAGCAGCCGCTGGGCACAGTGCCCTCTAGAGgcCCTTCCCCTCAGCCCAGTCGTTCCAACTCAACTTCAGGACAGGCTGGAGCCAGAGTGATGCGTGCACTGGTGCCACACCCACCTTCTGCAAACTCCACCCTCCTGCCATTCGCCAAAGGAGAAAGCATTACACTTCTCGTCAAAGAGCCAAGGAACGGCTGGCTGTTTGGACGCGCTGACAGCTCTGGACGGCAAGGCTGGTTCCCTGCTGCTTACGTGGGCCTCACAGATGGACCACCTGGACCACCTGTTCCCAGCAGCAGCTCTTTTAGAAGAAGCAACAGTATGAACAATCTCCTGGACCAGCCCTTCAGCAGCAGCCAGCAAGCAGCTCCACCTGCGCCTGCGCCTGCacctccaccaccaccacctccaTCAACCAGATCCAGCAGCTCCAGACCGGTCACTCCGACTCCTTCAGAAAACAGAAGACAGGATAGCTACGAGTCTCGACCAGCACTGTTTCCAAGAGGCACAAATCCATTTGCCACAGTCAAGCTGAAACCCACCAAAACCAATGACCGATCAGCTCCTCGCATATGAATCCTTCATCCAATGGCAGATCAGCGCCTTCACAATTATTCAATAGCTAATCAGCGCCGCACattttactgtacattgtttCCGCCACATTCAAAAGCATTAATTTTCCAGCATAATCAGAACAAAGCATCACATTTGAGACAATACAACTCAACAATGATCAATGAGCAGTCGTAACGTACCTTTATCTGCAGGCTGTTGAAGAATTGGAGGCAGCAAACTCTATTAATAACACTCCTTGATATGCAATGGGCGCCATAAAGTATCTGGACAACTAAATCCACGCTTAAATGGTGTGAATTTTGTGGCGTGGAATAATTAAACAAGTACTGCAGGTGGTTTTTTATTGGATGTTGAAGCCAGATCAGAAGTTCACCCAGGTGTCCTGTAAGATTAACCACAGGTGCAGTTCATCACTGTAATTAACGGCATTTTGCACTAATGGAGGGTTTCAAATGCAATATATTGCTCTCTAAAGGGAATCCCAGAGAGAAAATGATGGACGTCATATTTAAGTGCCCTTTTAAAGCAAAGTGTTTAAAACTGGCTACTTTGAAGAGCCCTTTGAAATGAATGATCCTTTGAGCAGGGAAGTTTTTTGACATCGAACAACCCTTGAAAGAGCTTAGGATACAGGAATGAGCCCTTCTAAGGGAAGCATGCTACAACATTAGATTTTTATCATTTGAAAGCAAAGAAATGTTAAAAAGGCTCTTTTTGCGAAATGTTTGGTTTGAAAGGAGCAAGAAATGgtgatttttttagtttaaaaaaaatatgcacttggtttaatgtctcctcatttttttaaatctggaaatGTAAATAGAAGATAACTCAAACACTTCTAAGTGCTTAGAATAGATAAATGCATATGAGATACATCTACATACATATAATCGTACATAATTTGTACTCTGTAGGTGAATATCGTTGTTAAAGCATCACTGAATGCACTTTATGAATGTATTCTGTCATATTATTTGCCACCAGGGCTGGTTTAACTACAGTTGTATGTGGTTTGACCTCTGAGACCCAGCGGCTTCTCTGATAAGCGACCATTGGCCTCTTTTTCTCCCGCTCTATGCTTGAACTTTGTCTCTCGGCTCAGTTAATCCATCTGACGGGCCCAATTATAAAATGCCCTTAAATTGGCTGCTCTGTCTGCTTAAGTGCCTATAAAGCGAATGTTCATTTTAACCTTGACAGTAATTGGTGTGACCTTCTCCTGAGGTGTCAGAGCCATTAGTACAAGCCCATTTGTAGGGATGTCTTGCATCTCATCagctacttcttttttttttttttttgagaatatttttctgtttaattaatGCTGATTATTCGAAACATAAACATGCACCTATATGTGCACCTGTGATTTACACTTGTTAGGCTTTGACTAGAGAACACAAGGACAAGATGCAGAGGACATCACATGTGATATATCTTCTTGATcttgttgttaaattaaatgtttgaagTTAATGTCTCTGAAAGGGTCATTTTTAAAGAGTTTGTAGGACAGGTCGGCTTTGATGCGTAATAAATGTATCAAATGTGTCTTTC
>TCONS_00051345
TGACAGATCAAGATGTCAGGACAAAACAGTGATCAACTGCATCGCACCACTCTGGGCATTTATACGAGCATAATAGAGCAGTTCAACCCGAGCCTGCAAAGACTGGTGTCACTGGGAAACAGCTACATTCAGGCTTTCCAAGCACTTGCTGCCACCAGCGAGGCCTATTTCGATGCTCTGTCTAAGATGGGTGAACAGGCCATGCTGAGCAGGTCCTCACGTTTACTGGGTGATGTGTTGATACAGATGTCAGACAGTCAGAGGAGACTCACCAACGAGCTGGAGGGAGTGTTTCGCTGGTTCCACTCGGAGGTCCTTCAAGAGATGGACAACAATGTCAGATTGGATAAAGATTACATATCGACCAGCAGGAGGAGATATGAGATGGAGGTGAGAAACCAGGCAACAGCACTGGAGAGACAGATGAGGCGAGGAGTACCGCAGgaTGGCAGTGAATATGTGCACTTTCTCAAGGAGTGTCAGAAGGAGGCGTTAAAGGAGGAGGAAAGGCGATATCGATTCCTGGCGGAAAAACACTGTGGGCTGACTCAGTCTATTGCTCATCTCATGAACAAGACAGGGGGCAGCCTGCAAAACAGAGCAGAGGGGTGGAAAGATCTGGTGGATCACACAAGAGAATCCCGTTCACGCACTCCTTCACGGCTGGAGGACAACATTCCTGATGTTAACCGCTGGGCAGAGCAGCCGCTGGGCACAGTGCCCTCTAGAGgcCCTTCCCCTCAGCCCAGTCGTTCCAACTCAACTTCAGGACAGGCTGGAGCCAGAGTGATGCGTGCACTGGTGCCACACCCACCTTCTGCAAACTCCACCCTCCTGCCATTCGCCAAAGGAGAAAGCATTACACTTCTCGTCAAAGAGCCAAGGAACGGCTGGCTGTTTGGACGCGCTGACAGCTCTGGACGGCAAGGCTGGTTCCCTGCTGCTTACGTGGGCCTCACAGATGGACCACCTGGACCACCTGTTCCCAGCAGCTCTTTTAGAAGAAGCAACAGTATGAACAATCTCCTGGACCAGCCCTTCAGCAGCAGCCAGCAAGCAGCTCCACCTGCGCCTGCGCCTGCacctccaccaccaccacctccaTCAACCAGATCCAGCAGCTCCAGACCGGTCACTCCGACTCCTTCAGAAAACAGAAGACAGGATAGCTACGAGTCTCGACCAGCACTGTTTCCAAGAGGCACAAATCCATTTGCCACAGTCAAGCTGAAACCCACCAAAACCAATGACCGATCAGCTCCTCGCATATGA
>TCONS_00051346
GGACAGCAGAGACTGGTTTTCCGCGGTAGCGATGGAGATCCTGCGCCGTGGAGGAGCGAGTGAACCAACCACAAAAACACACGCGCGCGCCTCTACACGGCGGCCCATGCAGAGACACCACACACTGATCGACAAATCACTCACACTGCGCGAATCAAGATGAAAACAAGTGACAGATCAAGATGTCAGGACAAAACAGTGATCAACTGCATCGCACCACTCTGGGCATTTATACGAGCATAATAGAGCAGTTCAACCCGAGCCTGCAAAGACTGGTGTCACTGGGAAACAGCTACATTCAGGCTTTCCAAGCACTTGCTGCCACCAGCGAGGCCTATTTCGATGCTCTGTCTAAGATGGGTGAACAGGCCATGCTGAGCAGGTCCTCACGTTTACTGGGTGATGTGTTGATACAGATGTCAGACAGTCAGAGGAGACTCACCAACGAGCTGGAGGGAGTGTTTCGCTGGTTCCACTCGGAGGTCCTTCAAGAGATGGACAACAATGTCAGATTGGATAAAGATTACATATCGACCAGCAGGAGGAGATATGAGATGGAGGTGAGAAACCAGGCAACAGCACTGGAGAGACAGATGAGGCGAGGAGTACCGCAGgaTGGCAGTGAATATGTGCACTTTCTCAAGGAGTGTCAGAAGGAGGCGTTAAAGGAGGAGGAAAGGCGATATCGATTCCTGGCGGAAAAACACTGTGGGCTGACTCAGTCTATTGCTCATC

Function

symbol description
baiap2l2a Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within plasma membrane organization. Predicted to be active in cytosol and nucleoplasm. Is expressed in blood and ventral mesoderm. Orthologous to human BAIAP2L2 (BAR/IMD domain containing adaptor protein 2 like 2).

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:2000251 positive regulation of actin cytoskeleton reorganization biological_process
GO:0007009 plasma membrane organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-10 Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within plasma membrane organization. Predicted to be active in cytosol and nucleoplasm. Is expressed in blood and ventral mesoderm. Orthologous to human BAIAP2L2 (BAR/IMD domain containing adaptor protein 2 like 2).

Ensembl:

ensembl_id ENSDARG00000016483

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051344 False 2931 mRNA 0.45 14 24437363 24456538
TCONS_00051345 False 1272 mRNA 0.53 14 24438932 24456451
TCONS_00051346 True 735 mRNA 0.51 8 24448102 24458281

Neighbor

gene id symbol gene type direction distance location
XLOC_026329 CR790377.1 coding downstream 34094 24403149 ~ 24403269 (-)
XLOC_026328 csf2rb coding downstream 99200 24314697 ~ 24338163 (-)
XLOC_026327 si:dkey-110g7.8 coding downstream 232024 24201956 ~ 24205339 (-)
XLOC_026326 nfe2l1a coding downstream 344219 24072720 ~ 24093144 (-)
XLOC_026325 CR751227.3 coding downstream 619317 23817922 ~ 23818046 (-)
XLOC_026331 BX569789.1 coding upstream 216748 24675029 ~ 24681404 (-)
XLOC_026332 BX569789.2 coding upstream 287485 24745766 ~ 24745881 (-)
XLOC_026333 CABZ01050944.1 coding upstream 335640 24793921 ~ 24909245 (-)
XLOC_026334 desi1a coding upstream 514744 24973025 ~ 24980067 (-)
XLOC_026335 ep300b coding upstream 538649 24996930 ~ 25055795 (-)
XLOC_026322 NA non-coding downstream 386509 23663144 ~ 24050854 (-)
XLOC_026324 NA non-coding downstream 693084 23740351 ~ 23744279 (-)
XLOC_026323 BX927395.1 non-coding downstream 749076 23686198 ~ 23688287 (-)
XLOC_026339 BX470254.1 non-coding upstream 673739 25132020 ~ 25135109 (-)
XLOC_026348 NA non-coding upstream 1224603 25682884 ~ 25701218 (-)
XLOC_026350 NA non-coding upstream 1481927 25940208 ~ 25950390 (-)
XLOC_026351 NA non-coding upstream 1492944 25951225 ~ 25974082 (-)

Expression


Co-expression Network