RNA id: TCONS_00051346


Basic Information

Item Value
RNA id TCONS_00051346
length 735
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_026330
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24437363 ~ 24458281 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACAGCAGAGACTGGTTTTCCGCGGTAGCGATGGAGATCCTGCGCCGTGGAGGAGCGAGTGAACCAACCACAAAAACACACGCGCGCGCCTCTACACGGCGGCCCATGCAGAGACACCACACACTGATCGACAAATCACTCACACTGCGCGAATCAAGATGAAAACAAGTGACAGATCAAGATGTCAGGACAAAACAGTGATCAACTGCATCGCACCACTCTGGGCATTTATACGAGCATAATAGAGCAGTTCAACCCGAGCCTGCAAAGACTGGTGTCACTGGGAAACAGCTACATTCAGGCTTTCCAAGCACTTGCTGCCACCAGCGAGGCCTATTTCGATGCTCTGTCTAAGATGGGTGAACAGGCCATGCTGAGCAGGTCCTCACGTTTACTGGGTGATGTGTTGATACAGATGTCAGACAGTCAGAGGAGACTCACCAACGAGCTGGAGGGAGTGTTTCGCTGGTTCCACTCGGAGGTCCTTCAAGAGATGGACAACAATGTCAGATTGGATAAAGATTACATATCGACCAGCAGGAGGAGATATGAGATGGAGGTGAGAAACCAGGCAACAGCACTGGAGAGACAGATGAGGCGAGGAGTACCGCAGgaTGGCAGTGAATATGTGCACTTTCTCAAGGAGTGTCAGAAGGAGGCGTTAAAGGAGGAGGAAAGGCGATATCGATTCCTGGCGGAAAAACACTGTGGGCTGACTCAGTCTATTGCTCATC

Function

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:2000251 positive regulation of actin cytoskeleton reorganization biological_process
GO:0007009 plasma membrane organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-10 Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within plasma membrane organization. Predicted to be active in cytosol and nucleoplasm. Is expressed in blood and ventral mesoderm. Orthologous to human BAIAP2L2 (BAR/IMD domain containing adaptor protein 2 like 2).

Ensembl:

ensembl_id ENSDART00000153993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053015 lncRNA downstream 397248 23701286 ~ 24050854 (-) False XLOC_026322
TCONS_00053014 lncRNA downstream 397812 23701286 ~ 24050290 (-) False XLOC_026322
TCONS_00051338 lncRNA downstream 398019 23934882 ~ 24050083 (-) True XLOC_026322
TCONS_00053013 lncRNA downstream 398038 23701286 ~ 24050064 (-) False XLOC_026322
TCONS_00051335 lncRNA downstream 587161 23747574 ~ 23860941 (-) False XLOC_026322
TCONS_00051360 lncRNA upstream 673739 25132020 ~ 25135109 (-) True XLOC_026339
TCONS_00051366 lncRNA upstream 812438 25270719 ~ 25273434 (-) False XLOC_026342
TCONS_00051380 lncRNA upstream 1224603 25682884 ~ 25699598 (-) False XLOC_026348
TCONS_00051379 lncRNA upstream 1224603 25682884 ~ 25701218 (-) False XLOC_026348
TCONS_00053019 lncRNA upstream 1233045 25691326 ~ 25699602 (-) False XLOC_026348
TCONS_00051341 mRNA downstream 109939 24314697 ~ 24338163 (-) False XLOC_026328
TCONS_00051342 mRNA downstream 110288 24318143 ~ 24337814 (-) True XLOC_026328
TCONS_00051340 mRNA downstream 242763 24201956 ~ 24205339 (-) True XLOC_026327
TCONS_00051339 mRNA downstream 354958 24072720 ~ 24093144 (-) True XLOC_026326
TCONS_00051330 mRNA downstream 804272 23641938 ~ 23643830 (-) True XLOC_026321
TCONS_00051347 mRNA upstream 216748 24675029 ~ 24681404 (-) True XLOC_026331
TCONS_00051349 mRNA upstream 335640 24793921 ~ 24909245 (-) True XLOC_026333
TCONS_00051350 mRNA upstream 514744 24973025 ~ 24980067 (-) True XLOC_026334
TCONS_00051351 mRNA upstream 538649 24996930 ~ 25055795 (-) False XLOC_026335
TCONS_00051352 mRNA upstream 539813 24998094 ~ 25054002 (-) True XLOC_026335
TCONS_00051343 other downstream 44833 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051337 other downstream 630056 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051315 other downstream 1013101 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051313 other downstream 1065494 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051290 other downstream 2270974 22161451 ~ 22177128 (-) False XLOC_026304
TCONS_00051348 other upstream 287485 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051354 other upstream 621168 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051368 other upstream 815861 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051408 other upstream 2204767 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051423 other upstream 2607104 27065385 ~ 27066120 (-) True XLOC_026380

Expression Profile

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