RNA id: TCONS_00051350


Basic Information

Item Value
RNA id TCONS_00051350
length 2138
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_026334
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24973025 ~ 24980067 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACGCTGCTTCTTCACAGGCGGCTTGGAAGGACAGCTAGCCTATTCATCTTCGATCATCCTTATAAAGTAGCTTTATCGTGTTTTATTTCCTTAAACCCTCCTAATGCCGTAGACTGTCCGAACGTCCCACACAGATAAAATATTTCAGACATTTTAAAACTGACACTGATAGACCGTCGTGATTATTTGAGGATCTTGAGGCCGCGAGAGCTGCAGGTACCGCAGGCAAGGCTAACGTTTAGTCAGCCGCATTCAGACACCAGCATCACTTTAACATGGAGCAACACGACTCGACGTTTGGAGTCCAGCTCTTCATTTATGACCTGTCGAGGGGAATGGCACGGCAGCTCAGCCCGATAATGCTGGGAAAGCAGCTTGATGGGATTTGGCACACGTCTATAGTGATCTATGGTGAGGAATTCTTCTATGGTGGTGCTGGGATCTCTAGTTGCCCACCGGGAGGGACGATGCTTGGACCTCCAGATACAGTGGTGGAGTTGGGAAATACAGAAGTGACGGAAGAGATCTTTATGGATTATCTATCCTCACTTGGAGAGACAACGTATAGTGGTGACAAGTATAGATTGTTTGAACACAACTGTAACACGTTCACTAATGAGGTGGCCCAGTTTCTCACTGGCAATAAAATACCCACCTATATCACCGATCTGCCCTCTGAAGTGCTCTCCACgcCATTTGGTCAGGTGTTGCGGCCAATCCTGGACTCGATACATATTGCTCCTCCAGGCGGAAATGTGATCAGCAGCCAAAATAATCATAGTTAGATCAGCTTTGTAATCTCACACTTGCATACACATGCAATAATTCACACATTGGCTgtttatacacagacacacacacacatttgcccTGTTGTAAATTAGGTTGGCTCAAAAAACCTAATGAACAACATCCATTTCAAATCCAAATTCACAGTTTCTCAAATATTTTGAGGCCGTGTTTCAGGTCATCTCTCCAGATCATGGATGGGTTCATATTTTTTTTAGTGTTGAGTTCTTGGTTTCTATGGTTTTCATTTCATCGTCtatctttattttgtatatctTCAGCCCACCACATGCAAAGGTCAGTTGTTGTTTGTTGATGACAATCCAACTTTTGTTTTCCTCTGTTGCTAGTTTTGATTTAATCATTTCATGTTGTTTTTCCCACCAATATTTATGTGGCAAgccaaaataatagtaaaattatcttcatatttatttctgagcatatttatttttgtgcacaAGTTTGTGGAAGACTAGCACATGTAATATAGTTTGTGTAATTAAGTTCCTTCAGCTCTAAAGATCTCATGACCAGCTCAGATTTACAGAGAAATACAGTATGTATCGGTGCCTTTGCCTTGGCAGCTTGGGCACAAGTGACATTTTTATCTATGTAGTACTAAAGACAAATTATTTATACATCTTATGCTTAAGATAGATGTTGTGTCCTGGATATATTTACCCATATAAATGCTTTTCTATATGCTGATTTGCATTCATGAAAGTGAAGTTTACTGCTGTTACCAGTGTTATATGGCTGAATGTGTCTTTGTTATGtggtatttattaacatattcctttatttattcggCACAAATGATCAtttaagacaggggtgtccaaacttagtcctggagggccagtgcccagcatagtttagctctaactttcttcaacacacttgcctggaagtgtttaattggagttggaactaaaatgcaggacaccgaccctccagggccgagtttgggcacccctgctttaagaaaTGTTCAGAAATTTTTGATGAAAGACTAAATTCTTTTGTGTTTGTGGTCTTGTTCTCATTATCAAAATGTGGATGCAAACCTTAAACTGCATTGACTGTTTTAAGCTTTATCCTCGTGTTTTAATGGAAGTCACCTAGGTTGCCCCAAGGTTGATACCAGTGTAAGGtgtgggtgtatatatatatttaaaaaacaaacataacttTACTAAAATGCTTTGGAATAACAAACTATTTTAAGTTATCGTCTTGATATATTGTCTTGAAAATTTAACAGATTCCCACTATTTGCTTTTGACCGTCTCTGCCACCTGAATCTTGCATTCACCTTCAATTAAAATAATAgtctaattttca

Function

GO:

id name namespace
GO:0070646 protein modification by small protein removal biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1657 Predicted to enable hydrolase activity. Predicted to be involved in protein modification by small protein removal. Is expressed in nervous system and trigeminal placode. Orthologous to human DESI1 (desumoylating isopeptidase 1).

Ensembl:

ensembl_id ENSDART00000048871

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053015 lncRNA downstream 922171 23701286 ~ 24050854 (-) False XLOC_026322
TCONS_00053014 lncRNA downstream 922735 23701286 ~ 24050290 (-) False XLOC_026322
TCONS_00051338 lncRNA downstream 922942 23934882 ~ 24050083 (-) True XLOC_026322
TCONS_00053013 lncRNA downstream 922961 23701286 ~ 24050064 (-) False XLOC_026322
TCONS_00051335 lncRNA downstream 1112084 23747574 ~ 23860941 (-) False XLOC_026322
TCONS_00051360 lncRNA upstream 151953 25132020 ~ 25135109 (-) True XLOC_026339
TCONS_00051366 lncRNA upstream 290652 25270719 ~ 25273434 (-) False XLOC_026342
TCONS_00051380 lncRNA upstream 702817 25682884 ~ 25699598 (-) False XLOC_026348
TCONS_00051379 lncRNA upstream 702817 25682884 ~ 25701218 (-) False XLOC_026348
TCONS_00053019 lncRNA upstream 711259 25691326 ~ 25699602 (-) False XLOC_026348
TCONS_00051349 mRNA downstream 63780 24793921 ~ 24909245 (-) True XLOC_026333
TCONS_00051347 mRNA downstream 291621 24675029 ~ 24681404 (-) True XLOC_026331
TCONS_00051346 mRNA downstream 514744 24448102 ~ 24458281 (-) True XLOC_026330
TCONS_00051344 mRNA downstream 516487 24437363 ~ 24456538 (-) False XLOC_026330
TCONS_00051345 mRNA downstream 516574 24438932 ~ 24456451 (-) False XLOC_026330
TCONS_00051351 mRNA upstream 16863 24996930 ~ 25055795 (-) False XLOC_026335
TCONS_00051352 mRNA upstream 18027 24998094 ~ 25054002 (-) True XLOC_026335
TCONS_00051353 mRNA upstream 79435 25059502 ~ 25086986 (-) False XLOC_026336
TCONS_00051355 mRNA upstream 121893 25101960 ~ 25107802 (-) False XLOC_026337
TCONS_00051356 mRNA upstream 121897 25101964 ~ 25106878 (-) True XLOC_026337
TCONS_00051348 other downstream 227144 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051343 other downstream 569756 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051337 other downstream 1154979 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051315 other downstream 1538024 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051313 other downstream 1590417 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051354 other upstream 99382 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051368 other upstream 294075 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051408 other upstream 1682981 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051423 other upstream 2085318 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051424 other upstream 2103231 27083298 ~ 27083414 (-) True XLOC_026381

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_00735558_00738466.mRNA True 1590 mRNA 0.39 6 CI01000034 735487 ~ 739475 (+)