RNA id: TCONS_00051355


Basic Information

Item Value
RNA id TCONS_00051355
length 548
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_026337
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25101960 ~ 25107802 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTTTCTCGCGAGATCATCAGACATTAGCAAACATGGCGGCCGCGATGGATGTGGACACCCCAAGTGGAGCTAACAGCGGAGCCAGTAAAAAGCGATTTGAAGTGAAAAAGTGGAACGCTGTGGCTCTGTGGGCATGGGACATTGTAGTGGACAACTGTGCCATCTGCAGAAATCACATTATGGACCTCTGTATTGAGTGTCAGGCCAATCAGGCGTCTGCCACCTCAGAGGAGTGTACGGTGGCCTGGGGAGTCTGCAATcaCGCTTTTCATTTCCACTGCATCTCCCGCTGGCTGAAGACCAGACAAGTGTGTCCACTGGACAACAGAGAGTGGGAGTTTCAGAAGTATGGTCATTAGACGTGTATCTGCAGATCTGTGTTTGTGTTCCCTTCCAAGATGTCCTTTCCTGAGCTCCATCACAATTTCTCCCTGTTGAAGACTAGCCGGTCTAAATTGGAATActagttatgatttttttttttatttctgtgctGTGTGCAGGATTCAGTGATGCAAATTATCAATAAATTCCCTCTAAATCAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0097602 cullin family protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04120 Ubiquitin mediated proteolysis
ko03420 Nucleotide excision repair
ko04310 Wnt signaling pathway
ko04341 Hedgehog signaling pathway - fly
ko04350 TGF-beta signaling pathway
ko04066 HIF-1 signaling pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04114 Oocyte meiosis
ko04710 Circadian rhythm
ko05200 Pathways in cancer
ko05211 Renal cell carcinoma
ko05170 Human immunodeficiency virus 1 infection
ko05131 Shigellosis
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041008-106 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human RBX1 (ring-box 1).

Ensembl:

ensembl_id ENSDART00000055432

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053015 lncRNA downstream 1051106 23701286 ~ 24050854 (-) False XLOC_026322
TCONS_00053014 lncRNA downstream 1051670 23701286 ~ 24050290 (-) False XLOC_026322
TCONS_00051338 lncRNA downstream 1051877 23934882 ~ 24050083 (-) True XLOC_026322
TCONS_00053013 lncRNA downstream 1051896 23701286 ~ 24050064 (-) False XLOC_026322
TCONS_00051335 lncRNA downstream 1241019 23747574 ~ 23860941 (-) False XLOC_026322
TCONS_00051360 lncRNA upstream 24218 25132020 ~ 25135109 (-) True XLOC_026339
TCONS_00051366 lncRNA upstream 162917 25270719 ~ 25273434 (-) False XLOC_026342
TCONS_00051380 lncRNA upstream 575082 25682884 ~ 25699598 (-) False XLOC_026348
TCONS_00051379 lncRNA upstream 575082 25682884 ~ 25701218 (-) False XLOC_026348
TCONS_00053019 lncRNA upstream 583524 25691326 ~ 25699602 (-) False XLOC_026348
TCONS_00051353 mRNA downstream 14974 25059502 ~ 25086986 (-) False XLOC_026336
TCONS_00051351 mRNA downstream 46165 24996930 ~ 25055795 (-) False XLOC_026335
TCONS_00051352 mRNA downstream 47958 24998094 ~ 25054002 (-) True XLOC_026335
TCONS_00051350 mRNA downstream 121893 24973025 ~ 24980067 (-) True XLOC_026334
TCONS_00051349 mRNA downstream 192715 24793921 ~ 24909245 (-) True XLOC_026333
TCONS_00051357 mRNA upstream 1166 25108968 ~ 25119839 (-) False XLOC_026338
TCONS_00051358 mRNA upstream 2075 25109877 ~ 25118777 (-) False XLOC_026338
TCONS_00051359 mRNA upstream 3553 25111355 ~ 25116208 (-) True XLOC_026338
TCONS_00051361 mRNA upstream 28351 25136153 ~ 25148047 (-) True XLOC_026340
TCONS_00051362 mRNA upstream 129597 25237399 ~ 25268751 (-) True XLOC_026341
TCONS_00051354 other downstream 15009 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051348 other downstream 356079 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051343 other downstream 698691 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051337 other downstream 1283914 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051315 other downstream 1666959 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051368 other upstream 166340 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051408 other upstream 1555246 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051423 other upstream 1957583 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051424 other upstream 1975496 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051431 other upstream 2535554 27643356 ~ 27647823 (-) False XLOC_026385

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU192195 True 404 TUCP 0.45 3 CI01000034 645451 ~ 646410 (+)
striped catfish (Pangasianodon hypophthalmus) TU472807 False 664 TUCP 0.45 6 NC_047623.1 1561212 ~ 1576955 (+)
mexican tetra (Astyanax mexicanus) TU264807 True 596 lncRNA 0.48 5 NC_035919.1 3220675 ~ 3228456 (+)